spctools-discuss  

Messages by Thread

• • RE: [spctools-discuss] how to convert profile data in RAW to centroid data in mzXML? Eric Deutsch
  • Re: [spctools-discuss] how to convert profile data in RAW to centroid data in mzXML? zeyu sun
  • Re: [spctools-discuss] how to convert profile data in RAW to centroid data in mzXML? Robert Willows
• [spctools-discuss] Re: Having trouble with converting large raw files to mzML or mz[X]ML Ruby
  • [spctools-discuss] Re: Having trouble with converting large raw files to mzML or mz[X]ML Florian
• [spctools-discuss] Regex for specifying decoy database entry label? Brian Hampton
  • Re: [spctools-discuss] Regex for specifying decoy database entry label? Luis Mendoza
• [spctools-discuss] error in building consensus library Rachel
  • [spctools-discuss] Re: error in building consensus library Rachel
  • RE: [spctools-discuss] Re: error in building consensus library Eric Deutsch
  • RE: [spctools-discuss] Re: error in building consensus library Eric Deutsch
• [spctools-discuss] Problems : converting ~.dat and ~.sqt to pepxml Hoikeun Jeong
  • Re: [spctools-discuss] Problems : converting ~.dat and ~.sqt to pepxml Luis Mendoza
  • Re: [spctools-discuss] Problems : converting ~.dat and ~.sqt to pepxml Hoikeun Jeong
  • Re: [spctools-discuss] Problems : converting ~.dat and ~.sqt to pepxml Luis Mendoza
• [spctools-discuss] pepxml problems from ~.dat and ~.sqt Hoikeun Jeong
• [spctools-discuss] error 4: Syntax error parsing XML and Tandem2XML Amin Momin
• Re: [spctools-discuss] X!Tandem/TPP adding modifications not specified zeyu sun
  • Re: [spctools-discuss] X!Tandem/TPP adding modifications not specified Joshua Dunham
  • RE: [spctools-discuss] X!Tandem/TPP adding modifications not specified Eric Deutsch
  • Re: [spctools-discuss] X!Tandem/TPP adding modifications not specified zeyu sun
• [spctools-discuss] Re: [proteowizard-support] Question about Qexactive RAW Chambers, Matthew
  • [spctools-discuss] Re: [proteowizard-support] Question about Qexactive RAW Amin Momin
  • [spctools-discuss] Re: [proteowizard-support] Question about Qexactive RAW Amin Momin
  • Re: [spctools-discuss] Re: [proteowizard-support] Question about Qexactive RAW Luis Mendoza
• [spctools-discuss] TPP keeps deleting prot.xml files -- bug & solution Ulrich Omasits
• [spctools-discuss] Environment variable WEBSERVER_ROOT does not exis: could not execute: C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml Gerard Such
  • Re: [spctools-discuss] Environment variable WEBSERVER_ROOT does not exis: could not execute: C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml Vishal Swaroop
  • Re: [spctools-discuss] Environment variable WEBSERVER_ROOT does not exis: could not execute: C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml Gerard Such
• [spctools-discuss] Is TPP working with MSGFPlus or not? Florian
  • [spctools-discuss] Re: Is TPP working with MSGFPlus or not? zeyu sun
  • [spctools-discuss] Re: Is TPP working with MSGFPlus or not? zeyu sun
  • [spctools-discuss] Re: Is TPP working with MSGFPlus or not? Florian
  • Re: [spctools-discuss] Re: Is TPP working with MSGFPlus or not? Jesse
  • [spctools-discuss] Re: Is TPP working with MSGFPlus or not? Jason Winget
  • Re: [spctools-discuss] Re: Is TPP working with MSGFPlus or not? David Shteynberg
  • Re: [spctools-discuss] Re: Is TPP working with MSGFPlus or not? zeyu sun
  • Re: [spctools-discuss] Re: Is TPP working with MSGFPlus or not? David Shteynberg
  • Re: [spctools-discuss] Re: Is TPP working with MSGFPlus or not? Florian
• [spctools-discuss] Webserver issue after TPP installation Florian
  • Re: [spctools-discuss] Webserver issue after TPP installation Vishal Swaroop
  • Re: [spctools-discuss] Webserver issue after TPP installation Florian
  • Re: [spctools-discuss] Webserver issue after TPP installation Teresa Laguna
• [spctools-discuss] webserver issue after installing TPP Florian
• [spctools-discuss] looking for help with ASAPratio zeyu sun
• [spctools-discuss] Is there any tool can simulate RNA:DNA binding? Thanks! Junyan Wu
• [spctools-discuss] using RT for improving spectral library searching (SpectraST) andreas . otto
• [spctools-discuss] bad allocation Ruby
  • Re: [spctools-discuss] bad allocation Jimmy Eng
• [spctools-discuss] TPP Ana
• [spctools-discuss] Transproteomic pipe line Ana
  • [spctools-discuss] Re: Transproteomic pipe line zeyu sun
• [spctools-discuss] protein prophet error Jesse
  • [spctools-discuss] Re: protein prophet error Alves
  • Re: [spctools-discuss] Re: protein prophet error Jesse
• [spctools-discuss] first start TPP...error! Elvira Inglese
• [spctools-discuss] Windows installer clears PATH variable windenthusiast
• [spctools-discuss] COMET issues Sebastian Wiese
  • Re: [spctools-discuss] COMET issues Michael Hoopmann
  • Re: [spctools-discuss] COMET issues Sebastian Wiese
• [spctools-discuss] TPP4.8.0 - Display all peptides on protein primary sequence in pepxml viewer Adam Oberstein
• [spctools-discuss] iPRG2015 - Deadline extended! Henry Lam
• [spctools-discuss] TPP 4.8 error with xinteract - runtime? Sarah Parker
  • Re: [spctools-discuss] TPP 4.8 error with xinteract - runtime? David Shteynberg
  • Re: [spctools-discuss] TPP 4.8 error with xinteract - runtime? Sarah Parker
  • Re: [spctools-discuss] TPP 4.8 error with xinteract - runtime? David Shteynberg
  • Re: [spctools-discuss] TPP 4.8 error with xinteract - runtime? Sarah Parker
• [spctools-discuss] TPP 4.8.0 compile fatal error Brian Hampton
  • Re: [spctools-discuss] TPP 4.8.0 compile fatal error Joseph Slagel
  • Re: [spctools-discuss] TPP 4.8.0 compile fatal error Brian Hampton
  • Re: [spctools-discuss] TPP 4.8.0 compile fatal error Joseph Slagel
• [spctools-discuss] How-To get Petunia TPP working with a network share as data directory Ulrich Omasits
  • Re: [spctools-discuss] How-To get Petunia TPP working with a network share as data directory Rebekah Dawson
  • [spctools-discuss] Re: How-To get Petunia TPP working with a network share as data directory zeyu sun
  • [spctools-discuss] Re: How-To get Petunia TPP working with a network share as data directory zeyu sun
  • [spctools-discuss] Re: How-To get Petunia TPP working with a network share as data directory Ulrich Omasits
  • [spctools-discuss] Re: How-To get Petunia TPP working with a network share as data directory Ruby
• Re: [spctools-discuss] Call for Participants: Proteome Informatics Research Group Community Study on Label-free Quantitative Proteomics Silvia Rocchiccioli
• [spctools-discuss] Command FAILED RETURN CODE:256 lei
  • Re: [spctools-discuss] Command FAILED RETURN CODE:256 Joseph Slagel
  • Re: [spctools-discuss] Command FAILED RETURN CODE:256 lei
• Re: [spctools-discuss] RTCalc (ANN) Chih-Chiang Tsou
  • Re: [spctools-discuss] RTCalc (ANN) David Shteynberg
  • Re: [spctools-discuss] RTCalc (ANN) Chih-Chiang Tsou
  • Re: [spctools-discuss] RTCalc (ANN) David Shteynberg
  • Re: [spctools-discuss] RTCalc (ANN) [email protected]
  • Re: [spctools-discuss] RTCalc (ANN) Chih-Chiang Tsou
• [spctools-discuss] xcorr (sequest) and charge filtering for pep.xml files andreas . otto
  • Re: [spctools-discuss] xcorr (sequest) and charge filtering for pep.xml files David Shteynberg
  • Re: [spctools-discuss] xcorr (sequest) and charge filtering for pep.xml files andreas . otto
• [spctools-discuss] TPP 4.8 (Windows) tandem output path not correct? Brian Hampton
  • Re: [spctools-discuss] TPP 4.8 (Windows) tandem output path not correct? David Shteynberg
  • Re: [spctools-discuss] TPP 4.8 (Windows) tandem output path not correct? Brian Hampton
• [spctools-discuss] TPP 4.8 msconvert error Brian Hampton
  • Re: [spctools-discuss] TPP 4.8 msconvert error Luis Mendoza
  • Re: [spctools-discuss] TPP 4.8 msconvert error Steffen Neumann
• [spctools-discuss] Problem in TPP 4.7.1 error output from Peptide Prophet Brian Hampton
  • Re: [spctools-discuss] Problem in TPP 4.7.1 error output from Peptide Prophet David Shteynberg
  • Re: [spctools-discuss] Problem in TPP 4.7.1 error output from Peptide Prophet Brian Hampton
• [spctools-discuss] Xtandem Fasta_pro executable fails handling big Fasta entries Canan Has
• Re: [spctools-discuss] question on PeptideProphet model-quality checks & problem with forced models David Shteynberg
• [spctools-discuss] PTMProphet error 钟传奇
• [spctools-discuss] TPP 4.8 How to view and export Xpress results with new ProtXML viewer Alejandro
  • Re: [spctools-discuss] TPP 4.8 How to view and export Xpress results with new ProtXML viewer Luis Mendoza
• [spctools-discuss] Xcorr filtering of pep.xml bert heinz
• [spctools-discuss] TPP 4.8.0 Release is now available Joseph Slagel
  • [spctools-discuss] Re: TPP 4.8.0 Release is now available Alejandro
  • [spctools-discuss] Re: TPP 4.8.0 Release is now available Alfonso Olaya Abril
  • [spctools-discuss] Re: TPP 4.8.0 Release is now available Vladimir Gorshkov
  • [spctools-discuss] Re: TPP 4.8.0 Release is now available MD
  • Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available Joseph Slagel
  • Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available Mohammad T Islam
  • Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available Joseph Slagel
  • Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available Mohammad T Islam
  • Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available Joseph Slagel
• [spctools-discuss] TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM) Alejandro
  • [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM) Alejandro
  • Re: [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM) Brian Hampton
  • Re: [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM) Alejandro
  • Re: [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM) Hannes Röst
  • Re: [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM) David Shteynberg
• [spctools-discuss] spectraST error Delphine
  • Re: [spctools-discuss] spectraST error David Shteynberg
  • Re: [spctools-discuss] spectraST error delphine wood
  • Re: [spctools-discuss] spectraST error Rene B
  • Re: [spctools-discuss] spectraST error delphine wood
  • Re: [spctools-discuss] spectraST error David Shteynberg
  • RE: [spctools-discuss] spectraST error Eric Deutsch
  • Re: [spctools-discuss] spectraST error delphine wood
  • RE: [spctools-discuss] spectraST error Eric Deutsch
  • Re: [spctools-discuss] spectraST error yuderuii
• [spctools-discuss] Re: MaRiMba fail with 18 protein mix file Victor Manuel Solis Mezarino
• [spctools-discuss] Re: Problem with MARIMBA, see ERROR messages below. Victor Manuel Solis Mezarino
• [spctools-discuss] Unable to explain peptide weights in Protein Prophet Ira Cooke
  • Re: [spctools-discuss] Unable to explain peptide weights in Protein Prophet Luis Mendoza
• [spctools-discuss] Error writing run Javier Sotillo Gallego
  • Re: [spctools-discuss] Error writing run Joseph Slagel
  • Re: [spctools-discuss] Error writing run Javier Sotillo Gallego
• [spctools-discuss] MAYU on peptideprophet and iprophet results Huoming Zhang
  • Re: [spctools-discuss] MAYU on peptideprophet and iprophet results David Shteynberg
• [spctools-discuss] translateDNA2AA-FASTA veronica . t . mutchler
  • Re: [spctools-discuss] translateDNA2AA-FASTA Jimmy Eng
  • Re: [spctools-discuss] translateDNA2AA-FASTA Veronica Mutchler
  • Re: [spctools-discuss] translateDNA2AA-FASTA Veronica Mutchler
  • Re: [spctools-discuss] translateDNA2AA-FASTA Jimmy Eng
  • Re: [spctools-discuss] translateDNA2AA-FASTA Veronica Mutchler
  • Re: [spctools-discuss] translateDNA2AA-FASTA Luis Mendoza
• [spctools-discuss] ASAPRatio on unlabeled samples? veronica . t . mutchler
• Re: [spctools-discuss] Re: parsing error for pepXML from mascot result Etienne Caron
  • Re: [spctools-discuss] Re: parsing error for pepXML from mascot result David Shteynberg
  • Re: [spctools-discuss] Re: parsing error for pepXML from mascot result Etienne Caron
• [spctools-discuss] .dat files/waters .raw data files Maria Jose Martinez
• [spctools-discuss] Can't kill command: no job id passed! 정진선
• [spctools-discuss] Re: Export result data for blast? zeyu sun
• [spctools-discuss] does the search using multiple threads for X!tandem affect k-score? Huoming Zhang
  • Re: [spctools-discuss] does the search using multiple threads for X!tandem affect k-score? David Shteynberg
  • Re: [spctools-discuss] does the search using multiple threads for X!tandem affect k-score? Huoming Zhang
• [spctools-discuss] Many potential modifications and X!Tandem : long search duration. DELOLME Frederic
  • Re: [spctools-discuss] Many potential modifications and X!Tandem : long search duration. David Shteynberg
  • Re: [spctools-discuss] Many potential modifications and X!Tandem : long search duration. Frédéric DELOLME
• [spctools-discuss] Encoded charge does not match the assumed_charge 李桂林
  • [spctools-discuss] Re: Encoded charge does not match the assumed_charge 李桂林
  • Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge David Shteynberg
  • Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge 李桂林
  • Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge 李桂林
  • Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge David Shteynberg
  • Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge 李桂林
  • Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge David Shteynberg
  • Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge 李桂林
  • Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge 李桂林
• [spctools-discuss] Mascot2XML - no enzyme Vishal Swaroop
  • Re: [spctools-discuss] Mascot2XML - no enzyme Jimmy Eng
• [spctools-discuss] Tools for ms1 search using mass, retention time and isotopic pattern David Zhao
• [spctools-discuss] problem of PeptideProphetParser for large dataset zeyu sun
• [spctools-discuss] OMSSA and iprophet zeyu sun
• [spctools-discuss] X!tandem error zeyu sun
  • Re: [spctools-discuss] X!tandem error Jimmy Eng
  • Re: [spctools-discuss] X!tandem error zeyu sun
  • RE: [spctools-discuss] X!tandem error Eric Deutsch
  • Re: [spctools-discuss] X!tandem error zeyu sun
  • Re: [spctools-discuss] X!tandem error Brian Hampton
  • Re: [spctools-discuss] X!tandem error zeyu sun
• [spctools-discuss] How to process MS3 Data from Orbitrap Fusion? Will Fondrie
  • Re: [spctools-discuss] How to process MS3 Data from Orbitrap Fusion? Jimmy Eng
  • Re: [spctools-discuss] How to process MS3 Data from Orbitrap Fusion? Will Fondrie
  • Re: [spctools-discuss] How to process MS3 Data from Orbitrap Fusion? Will Fondrie
• [spctools-discuss] FWD: Deprecated CGI endform in tpp_gui.pl caused centos install to fail Joseph Slagel
  • Re: [spctools-discuss] FWD: Deprecated CGI endform in tpp_gui.pl caused centos install to fail Luis Mendoza
• [spctools-discuss] why peptideprophet model fails for 2+ peptides? Ulrich Omasits
• Re: [spctools-discuss] iTRAQ data through xtandem! using TPP Alberto Labarga
  • Re: [spctools-discuss] iTRAQ data through xtandem! using TPP Frédéric DELOLME
• [spctools-discuss] peptide probability filtering Kirill Borziak
• [spctools-discuss] Problems converting wiff files to mzML Jana Horáková
  • Re: [spctools-discuss] Problems converting wiff files to mzML Robert Winkler
  • Re: [spctools-discuss] Problems converting wiff files to mzML Jana Horáková
  • Re: [spctools-discuss] Problems converting wiff files to mzML Xabier Martinez De Morentin
• [spctools-discuss] Wiff file conversion to mzML Jana Horáková
  • Re: [spctools-discuss] Wiff file conversion to mzML 钟传奇
  • [spctools-discuss] Re: Wiff file conversion to mzML Xabier Martinez De Morentin
• [spctools-discuss] Libra condition.xml syntax Konstantinos Vougas

• Earlier messages
• Later messages