Right on! Thanks, Joe

On Nov 12, 4:16 pm, Joe Slagel <[email protected]> wrote:
> According to the proteowizard page is does:
>
> http://proteowizard.sourceforge.net/technical/formats/index.html
>
>
>
> On Fri, Nov 12, 2010 at 4:03 PM, Samuel_E <[email protected]> wrote:
> > Joe,
> > This is great news, thanks! I noticed that Waters .raw files are not
> > mentioned on the msconvert web page (http://tools.proteomecenter.org/
> > wiki/index.php?title=Msconvert_Capabilities<http://tools.proteomecenter.org/%0Awiki/index.php?title=Msconvert_Cap...>).
> >  It does work with
> > MassLynx .raw files, right?
>
> > Thanks,
> > Sam
>
> > On Nov 12, 2:14 pm, Joe Slagel <[email protected]> wrote:
> > > Samuel,
>
> > > The best solution might be to use msconvert instead of MassWolf.  You
> > should
> > > then be able to simply wildcard all of your raw files e.g. msconvert
> > --mzXML
> > > *.raw
>
> > > If you do this you'll also be using the latest supported conversion tool
> > --
> > > as massWolf is no longer supported.
>
> > > -Joe
>
> > > On Fri, Nov 12, 2010 at 11:33 AM, Samuel_E <[email protected]>
> > wrote:
> > > > I seem to be unable to process the conversion of .raw files to .mzXML
> > > > with massWolf for a folder of .raw files. The syntax I'm using is:
>
> > > > for %%f in (path\*.raw) do MassWolf --mzXML path\*.raw %f
>
> > > > massWolf works OK for single files with the command:
>
> > > > massWolf --mzXML path\filename.raw
>
> > > > How to convert in batch? Help!
>
> > > > Thanks
> > > > Samuel_E
>
> > > > --
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>
> > > > .
> > > > For more options, visit this group at
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>
> > > --
> > > Joe Slagel
> > > Institute for Systems Biology
> > > [email protected]
> > > (206) 732-1362
>
> > --
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>
> --
> Joe Slagel
> Institute for Systems Biology
> [email protected]
> (206) 732-1362

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