Thanks Luis. I did uninstall the old TPP and after re-installing th newer version, all worked fine.
Thanks again, ~Nikhil On Wed, Dec 1, 2010 at 2:56 PM, Luis Mendoza <[email protected]>wrote: > Hello Nikhil, > It seems that you are running an old version of the TPP (4.3.1); I > would suggest installing the newest available version (4.4.1) to see > if this problem still shows up for you. You seem to be running the > command from Petunia on a Windows install, is that correct? Did you > simply download the TPP, or did you build it from the source code? > > I am at this point not sure that the quotes are to blame, since this > seems to work for many other instances of the TPP out there. > > Hope this helps, > --Luis > > > > On Tue, Nov 23, 2010 at 9:04 AM, Nikhil Garge <[email protected]> > wrote: > > Hi, > > > > I am not able to run ProteinProphet. I get following error: > > > > c:\Inetpub\tpp-bin\ProteinProphet > > c:/Inetpub/wwwroot/ISB/data/PeptideProphetOutput.pep.xml > > c:/Inetpub/wwwroot/ISB/data/interact.prot.xml > > > > ________________________________ > > > > ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the > > original Perl by A. Keller (TPP v4.3 JETSTREAM rev 1, Build 200909091257 > > (MinGW)) > > (xml input) (report Protein Length) (using degen pep info) > > > > pipe "C:/Inetpub/tpp-bin/DatabaseParser > > "c:/Inetpub/wwwroot/ISB/data/PeptideProphetOutput.pep.xml"" failed: > Invalid > > argument > > > > Command FAILED > > ************* > > Looks like the "DatabaseParser" command is not able to execute. It might > > have added some unwanted quotes (in command). Becuase when I remove > quotes > > and run the same command on DOS prompt, it runs OK (showing me the FASTA > > file path). > > > >> C:/Inetpub/tpp-bin/DatabaseParser > >> c:/Inetpub/wwwroot/ISB/data/PeptideProphetOutput.pep.xml ----- > >> this command runs fine > > > > Please help me to make a smooth proteinProphet run. > > > > Thanks, > > ~Nikhil > > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to [email protected]. > > To unsubscribe from this group, send email to > > [email protected]<spctools-discuss%[email protected]> > . > > For more options, visit this group at > > http://groups.google.com/group/spctools-discuss?hl=en. > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]<spctools-discuss%[email protected]> > . > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
