Hello. I'm trying to compile a simple C++ program to read in an mzXML file and print to the screen the spectrum of a given scan number. I'm using proteowizard (revision 2414) to do this but without much luck.
There seems to be a problem with linking the files. When I compile my program with this command: g++ -Wall -I./pwiz_src pwizReader.cpp -o pwizReader.exe I get the following error messages: /tmp/cclnMeVZ.o: In function `main': pwizReader.cpp:(.text+0x102): undefined reference to `pwiz::msdata::MSDataFile::MSDataFile(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, pwiz::msdata::Reader const*, bool)' pwizReader.cpp:(.text+0x1bd): undefined reference to `pwiz::msdata::id::value(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)' pwizReader.cpp:(.text+0x299): undefined reference to `pwiz::msdata::MSData::~MSData()' pwizReader.cpp:(.text+0x30e): undefined reference to `pwiz::msdata::Spectrum::getMZIntensityPairs(std::vector<pwiz::msdata::MZIntensityPair, std::allocator<pwiz::msdata::MZIntensityPair> >&) const' /tmp/cclnMeVZ.o: In function `pwiz::msdata::MSDataFile::~MSDataFile()': pwizReader.cpp: (.text._ZN4pwiz6msdata10MSDataFileD1Ev[pwiz::msdata::MSDataFile::~MSDataFile()] +0x8): undefined reference to `pwiz::msdata::MSData::~MSData()' /tmp/cclnMeVZ.o: In function `pwiz::msdata::MSDataFile::~MSDataFile()': pwizReader.cpp: (.text._ZN4pwiz6msdata10MSDataFileD0Ev[pwiz::msdata::MSDataFile::~MSDataFile()] +0xc): undefined reference to `pwiz::msdata::MSData::~MSData()' /tmp/cclnMeVZ.o:(.rodata._ZTIN4pwiz6msdata10MSDataFileE[typeinfo for pwiz::msdata::MSDataFile]+0x10): undefined reference to `typeinfo for pwiz::msdata::MSData' collect2: ld returned 1 exit status These errors tell me that compiling isn't the issue but something is going wrong with the linking. Is there something obvious I'm missing here? Thanks in advance for any and all help. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
