dear list, i try to process some inspect results with the tpp 4.4.1 but i am running in some problems:
first i converted the .out file produced by inspect (current version) to a pep.xml (using the latest converter from terry :-) ). /usr/local/apps/inspect/InspectToPepXML.py -i run2.out -o run2.pep.xml -p inspect2.params -m /IMSB/users/quandtan/html/openBIS/strep_pyo the converter produced several warnings such as: WARNING: m/z for scan 9895 not found in spectrum file; precursor_neutral_mass will not be output however, a pep.xml was generated. afterwards, i run xinteract on the produced pep.xml file: xinteract -Nxinteract.pep.xml -dDECOY_ -OAPdlIw run2.pep.xml which then produced following error. running: "/usr/local/apps/tpp/bin/PeptideProphetParser 'xinteract.pep.xml' DECOY=DECOY_ ACCMASS NONPARAM DECOYPROBS LEAVE PI INSTRWARN" using Accurate Mass Bins using pI Using no error on different instrument types. Using Decoy Label "DECOY_". Decoy Probabilities will be reported. Using non-parametric distributions (InsPecT) WARNING!! The discriminant function for Inspect is not yet complete. It is presented here to help facilitate trial and discussion. Reliance on this code for publishable scientific results is not recommended. adding Accurate Mass mixture distr adding pI mixture distr init with InsPecT trypsin Segmentation fault command "/usr/local/apps/tpp/bin/PeptideProphetParser 'xinteract.pep.xml' DECOY=DECOY_ ACCMASS NONPARAM DECOYPROBS LEAVE PI INSTRWARN" exited with non-zero exit code: 35584 QUIT - the job is incomplete as i am not quite sure what the error code means respectively how to overcome the problem, i wanted to kindly ask if one of the experts here might know the answer. many thanks in advance! cheers, andreas -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
