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• [spctools-discuss] Tide & PeptideProphet Han Hu
  • Re: [spctools-discuss] Tide & PeptideProphet David Shteynberg
  • Re: [spctools-discuss] Tide & PeptideProphet David Shteynberg
  • Re: [spctools-discuss] Tide & PeptideProphet Han Hu
• [spctools-discuss] PepXML format from different search engines. Han Hu
• [spctools-discuss] Qualscore - 0 spectra written/NaN coefficients Job van Riet
• [spctools-discuss] Recruiting new members for iPRG 2016 Henry Lam
• [spctools-discuss] how many files can I merge in iprophet? Rachel
  • Re: [spctools-discuss] how many files can I merge in iprophet? David Shteynberg
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
  • [spctools-discuss] Re: how many files can I merge in iprophet? Mohammad
  • Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
  • [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
  • Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
• [spctools-discuss] xinteract alternative_proteins that don't contain the peptide Daniel Hyduke
  • Re: [spctools-discuss] xinteract alternative_proteins that don't contain the peptide Luis Mendoza
  • Re: [spctools-discuss] xinteract alternative_proteins that don't contain the peptide Daniel Hyduke
• [spctools-discuss] Processing MSGF+ searches [email protected]
  • Re: [spctools-discuss] Processing MSGF+ searches David Shteynberg
  • [spctools-discuss] Re: Processing MSGF+ searches [email protected]
  • [spctools-discuss] Re: Processing MSGF+ searches Jesse
  • Re: [spctools-discuss] Re: Processing MSGF+ searches David Shteynberg
  • RE: [spctools-discuss] Re: Processing MSGF+ searches Jesse G Meyer
  • Re: [spctools-discuss] Re: Processing MSGF+ searches David Shteynberg
  • Re: [spctools-discuss] Re: Processing MSGF+ searches Jesse
  • Re: [spctools-discuss] Re: Processing MSGF+ searches Jesse
  • Re: [spctools-discuss] Re: Processing MSGF+ searches David Shteynberg
  • Re: [spctools-discuss] Re: Processing MSGF+ searches Joseph Slagel
  • Re: [spctools-discuss] Re: Processing MSGF+ searches David Shteynberg
  • Re: [spctools-discuss] Re: Processing MSGF+ searches Jesse
  • Re: [spctools-discuss] Re: Processing MSGF+ searches HFaz
  • Re: [spctools-discuss] Re: Processing MSGF+ searches HFaz
• [spctools-discuss] MS3 quantification hh1985
  • Re: [spctools-discuss] MS3 quantification Jimmy Eng
  • Re: [spctools-discuss] MS3 quantification hh1985
  • Re: [spctools-discuss] MS3 quantification chanyeric
  • Re: [spctools-discuss] MS3 quantification Jimmy Eng
  • Re: [spctools-discuss] MS3 quantification chanyeric
• [spctools-discuss] Medium/Heavy comparison with XPress Damon May
  • [spctools-discuss] Re: Medium/Heavy comparison with XPress Amit Yadav
  • Re: [spctools-discuss] Re: Medium/Heavy comparison with XPress Damon May
  • Re: [spctools-discuss] Re: Medium/Heavy comparison with XPress Damon May
• [spctools-discuss] .Raw to .DTA or .PKL Avantika Dhabaria
  • Re: [spctools-discuss] .Raw to .DTA or .PKL Luis Mendoza
• [spctools-discuss] Problem(pr9) Rachel
• [spctools-discuss] MacOS installation Stephan Michalik
• [spctools-discuss] RE: Need your suggestion on TPP Eric Deutsch
• [spctools-discuss] error during mzML-conversion Dominique T
  • [spctools-discuss] Re: error during mzML-conversion Pamella Malagrino
• [spctools-discuss] Mascot.dat -> pepxml. How long should it take? SD
• Re: [spctools-discuss] PTM mod and methylations David Shteynberg
  • Re: [spctools-discuss] PTM mod and methylations delphine wood
  • Re: [spctools-discuss] PTM mod and methylations David Shteynberg
• [spctools-discuss] Re: PTM mod and methylations Delphine
• [spctools-discuss] RE: Information TPP analysis Eric Deutsch
• [spctools-discuss] TPP-4.8.0 compilation error (Linux 64bit): undefined reference to `gdImagePngPtr' Robert
  • Re: [spctools-discuss] TPP-4.8.0 compilation error (Linux 64bit): undefined reference to `gdImagePngPtr' Jimmy Eng
  • Re: [spctools-discuss] TPP-4.8.0 compilation error (Linux 64bit): undefined reference to `gdImagePngPtr' Robert Winkler
  • Re: [spctools-discuss] TPP-4.8.0 compilation error (Linux 64bit): undefined reference to `gdImagePngPtr' Joseph Slagel
• [spctools-discuss] TPP @ ASMS -- booth #56 Luis Mendoza
  • Re: [spctools-discuss] TPP @ ASMS -- booth #56 David Shteynberg
• [spctools-discuss] Using Proteome Discoverer to identify phosphopeptides fragmented by CID Siyuan Su
• [spctools-discuss] InteractParser mangles myrimatch pep.xml Daniel Hyduke
  • Re: [spctools-discuss] InteractParser mangles myrimatch pep.xml David Shteynberg
  • Re: [spctools-discuss] InteractParser mangles myrimatch pep.xml Daniel Hyduke
• [spctools-discuss] process triple labeled data with TPP-skyline? zeyu sun
• [spctools-discuss] Next TPP course in Vancouver, Canada September 22-25 Eric Deutsch
• [spctools-discuss] Libra problem alexandra . szopinska
• [spctools-discuss] Anyone know some way to convert mascote format (mass) to Fasta? Leandro de Mattos
  • Re: [spctools-discuss] Anyone know some way to convert mascote format (mass) to Fasta? Jimmy Eng
• Re: [spctools-discuss] PTM prophet unknown mod David Shteynberg
  • Re: [spctools-discuss] PTM prophet unknown mod delphine wood
  • Re: [spctools-discuss] PTM prophet unknown mod David Shteynberg
  • Re: [spctools-discuss] PTM prophet unknown mod David Shteynberg
  • Re: [spctools-discuss] PTM prophet unknown mod Jesse
  • Re: [spctools-discuss] PTM prophet unknown mod David Shteynberg
  • Re: [spctools-discuss] PTM prophet unknown mod Jesse
  • Re: [spctools-discuss] PTM prophet unknown mod Jesse
  • Re: [spctools-discuss] PTM prophet unknown mod David Shteynberg
• [spctools-discuss] Comet/tandem search on isobaric data zeyu sun
  • RE: [spctools-discuss] Comet/tandem search on isobaric data Eric Deutsch
  • Re: [spctools-discuss] Comet/tandem search on isobaric data zeyu sun
• [spctools-discuss] Any tips on how to analyzed triple labeled data? Alejandro
  • Re: [spctools-discuss] Any tips on how to analyzed triple labeled data? Brian Hampton
  • RE: [spctools-discuss] Any tips on how to analyzed triple labeled data? Eric Deutsch
  • [spctools-discuss] Re: Any tips on how to analyzed triple labeled data? Alejandro
  • [spctools-discuss] Re: Any tips on how to analyzed triple labeled data? Damon May
  • Re: [spctools-discuss] Re: Any tips on how to analyzed triple labeled data? Jimmy Eng
  • Re: [spctools-discuss] Re: Any tips on how to analyzed triple labeled data? Alejandro
• [spctools-discuss] pep probability near to zero andreas . otto
  • RE: [spctools-discuss] pep probability near to zero Eric Deutsch
• [spctools-discuss] ASPRatio not assigning correct mass values to chemically labeled residues Brian Hampton
• [spctools-discuss] relocatable binaries for TPP Björn Grüning
• [spctools-discuss] TPP binaries for HPC Björn Grüning
• [spctools-discuss] PTM Prophet on itraq data Filip
  • Re: [spctools-discuss] PTM Prophet on itraq data David Shteynberg
• [spctools-discuss] About adaptive LDA-EM Honglan Li
• [spctools-discuss] ProteoGrapher andreas . otto
  • Re: [spctools-discuss] ProteoGrapher David Shteynberg
  • [spctools-discuss] Re: ProteoGrapher andreas . otto
  • Re: [spctools-discuss] Re: ProteoGrapher David Shteynberg
• [spctools-discuss] I cannot continue or kill my job... c qin
• [spctools-discuss] how to continue or kill my jobs? c qin
  • Re: [spctools-discuss] how to continue or kill my jobs? 钟传奇
  • Re: [spctools-discuss] how to continue or kill my jobs? c qin
  • Re: [spctools-discuss] how to continue or kill my jobs? c qin
  • Re: [spctools-discuss] how to continue or kill my jobs? Jimmy Eng
  • Re: [spctools-discuss] how to continue or kill my jobs? c qin
  • Re: [spctools-discuss] how to continue or kill my jobs? Jimmy Eng
  • Re: [spctools-discuss] how to continue or kill my jobs? c qin
  • Re: [spctools-discuss] how to continue or kill my jobs? Jimmy Eng
  • Re: [spctools-discuss] how to continue or kill my jobs? c qin
• [spctools-discuss] how to build/add small peptide (4-6amino acid) library? Eileen Yue
  • RE: [spctools-discuss] how to build/add small peptide (4-6amino acid) library? Eric Deutsch
• [spctools-discuss] ** Strange spectrum format (Day_Mon_Time_YY...) in *.pep.xml Vishal Swaroop
• [spctools-discuss] Input for PeptideProphet Sinjini Sikdar
• [spctools-discuss] Q3ProteinRatioParser Josh Eckels
• [spctools-discuss] Libra quantification Henry Rodríguez
  • [spctools-discuss] Re: Libra quantification zeyu sun
  • Re: [spctools-discuss] Re: Libra quantification Jimmy Eng
  • Re: [spctools-discuss] Re: Libra quantification Jimmy Eng
  • Re: [spctools-discuss] Re: Libra quantification Chris Barnes
  • Re: [spctools-discuss] Re: Libra quantification Jimmy Eng
• [spctools-discuss] protxml and MAYU hh1985
  • Re: [spctools-discuss] protxml and MAYU 钟传奇
  • Re: [spctools-discuss] protxml and MAYU Luis Mendoza
  • Re: [spctools-discuss] protxml and MAYU hh1985
  • Re: [spctools-discuss] protxml and MAYU hh1985
• [spctools-discuss] PepXML Conversion Error David Baxter
• [spctools-discuss] pepXML conversion David Baxter
  • Re: [spctools-discuss] pepXML conversion David Shteynberg
  • Re: [spctools-discuss] pepXML conversion David Baxter
  • Re: [spctools-discuss] pepXML conversion David Baxter
  • Re: [spctools-discuss] pepXML conversion David Shteynberg
  • Re: [spctools-discuss] pepXML conversion David Baxter
• [spctools-discuss] Re: ASAPRatio parameters zeyu sun
• [spctools-discuss] how to shown ASAPratio value in ProtXML viewer? zeyu sun
  • Re: [spctools-discuss] how to shown ASAPratio value in ProtXML viewer? Luis Mendoza
  • Re: [spctools-discuss] how to shown ASAPratio value in ProtXML viewer? zeyu sun
• [spctools-discuss] how to combine search result from multiple enzyme digestion? zeyu sun
  • RE: [spctools-discuss] how to combine search result from multiple enzyme digestion? Jesse G Meyer
  • Re: [spctools-discuss] how to combine search result from multiple enzyme digestion? zeyu sun
• [spctools-discuss] sequence attributed to a "wrong" protein after combining pepxml Delphine
  • RE: [spctools-discuss] sequence attributed to a "wrong" protein after combining pepxml Eric Deutsch
  • Re: [spctools-discuss] sequence attributed to a "wrong" protein after combining pepxml delphine wood
  • Re: [spctools-discuss] sequence attributed to a "wrong" protein after combining pepxml Luis Mendoza
• [spctools-discuss] Protein FDR calculation Babeh Esleta
• [spctools-discuss] Problems with MGF spectra data Henry Rodríguez
  • [spctools-discuss] Re: Problems with MGF spectra data Henry Rodríguez
• Re: [spctools-discuss] sqt2xml error from Sequest or ProLuCID in IP2 for TPP Jimmy Eng
  • Re: [spctools-discuss] sqt2xml error from Sequest or ProLuCID in IP2 for TPP Heeyoun Hwang
  • Re: [spctools-discuss] sqt2xml error from Sequest or ProLuCID in IP2 for TPP Jimmy Eng
  • Re: [spctools-discuss] sqt2xml error from Sequest or ProLuCID in IP2 for TPP Heeyoun Hwang
  • Re: [spctools-discuss] sqt2xml error from Sequest or ProLuCID in IP2 for TPP Jimmy Eng
  • Re: [spctools-discuss] sqt2xml error from Sequest or ProLuCID in IP2 for TPP Heeyoun Hwang
• [spctools-discuss] MASCOT2XML syntax error depend on file size? Heeyoun Hwang
  • Re: [spctools-discuss] MASCOT2XML syntax error depend on file size? Luis Mendoza
  • Re: [spctools-discuss] MASCOT2XML syntax error depend on file size? Heeyoun Hwang
  • [spctools-discuss] Re: MASCOT2XML syntax error depend on file size? Heeyoun Hwang
• [spctools-discuss] MASCOT2XML syntax error depend on the file size? Heeyoun Hwang
• [spctools-discuss] ProLuCID or Sequest to TPP Heeyoun Hwang
• [spctools-discuss] Less protein IDs after running iProphet Florian
  • Re: [spctools-discuss] Less protein IDs after running iProphet David Shteynberg
  • Re: [spctools-discuss] Less protein IDs after running iProphet David Shteynberg
  • Re: [spctools-discuss] Less protein IDs after running iProphet Florian
  • Re: [spctools-discuss] Less protein IDs after running iProphet Alejandro
  • Re: [spctools-discuss] Less protein IDs after running iProphet David Shteynberg
  • Re: [spctools-discuss] Less protein IDs after running iProphet Alejandro
• [spctools-discuss] spectrast fail on comet pep.xml Rachel
  • Re: [spctools-discuss] spectrast fail on comet pep.xml Luis Mendoza
  • [spctools-discuss] Re: spectrast fail on comet pep.xml Rachel
  • Re: [spctools-discuss] Re: spectrast fail on comet pep.xml Jimmy Eng
  • Re: [spctools-discuss] Re: spectrast fail on comet pep.xml Jimmy Eng
  • [spctools-discuss] Re: spectrast fail on comet pep.xml Rachel
  • Re: [spctools-discuss] Re: spectrast fail on comet pep.xml David Shteynberg
  • [spctools-discuss] Re: spectrast fail on comet pep.xml Rachel
  • Re: [spctools-discuss] Re: spectrast fail on comet pep.xml Jimmy Eng
• [spctools-discuss] how to convert profile data in RAW to centroid data in mzXML? zeyu sun
  • Re: [spctools-discuss] how to convert profile data in RAW to centroid data in mzXML? Frédéric DELOLME

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