Hello all- I just discovered an issue with TPP's decoy database creation tool. When I was adding a reverse sequence decoy database to my database, many entries were deleted. When I went back to find out why, I discovered that whoever had put together the database had left some blank lines in it. Wherever a protein has a blank line above it, that protein gets deleted from the decoy database. I'm going to deleted the blank lines in my database and that should fix it, but this seems like something that should be addressed either as a code fix or just as a warning to users.
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