spctools-discuss  

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• 2015/10/21 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/10/21 Re: [spctools-discuss] QualScore question HFaz
• 2015/10/21 Re: [spctools-discuss] QualScore question David Shteynberg
• 2015/10/21 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
• 2015/10/21 [spctools-discuss] QualScore question HFaz
• 2015/10/21 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/10/12 Re: [spctools-discuss] readmzXML, tandem, and comet fail with files larger than 2 GB Daniel Hyduke
• 2015/10/12 Re: [spctools-discuss] readmzXML, tandem, and comet fail with files larger than 2 GB Jimmy Eng
• 2015/10/12 Re: [spctools-discuss] readmzXML, tandem, and comet fail with files larger than 2 GB Jimmy Eng
• 2015/10/12 Re: [spctools-discuss] readmzXML, tandem, and comet fail with files larger than 2 GB Daniel Hyduke
• 2015/10/09 Re: [spctools-discuss] readmzXML, tandem, and comet fail with files larger than 2 GB Jimmy Eng
• 2015/10/09 [spctools-discuss] Biological Sample Fingerprinting by Spectral Archives (-s_FIN): looking to acquire bootstrap support for all dot products rather than just default dot_product_unique_sqrt, but can't find proper command seifst
• 2015/10/09 [spctools-discuss] readmzXML, tandem, and comet fail with files larger than 2 GB Daniel Hyduke
• 2015/10/05 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
• 2015/10/05 [spctools-discuss] Re: how many files can I merge in iprophet? Mohammad
• 2015/10/05 [spctools-discuss] I have a problem with TTP Mohammad
• 2015/10/05 [spctools-discuss] having problem with Appache Mohammad Goodarzi
• 2015/10/02 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
• 2015/10/01 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/10/01 [spctools-discuss] Runtime error with ProteinProphet HFaz
• 2015/10/01 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
• 2015/09/23 Re: [spctools-discuss] Re: Processing MSGF+ searches HFaz
• 2015/09/23 Re: [spctools-discuss] Sequest on TPP Jimmy Eng
• 2015/09/23 Re: [spctools-discuss] Re: Processing MSGF+ searches HFaz
• 2015/09/22 [spctools-discuss] Sequest on TPP HFaz
• 2015/09/22 Re: [spctools-discuss] Re: Proteome Discoverer's .msf to TPP input files (pepXML) HFaz
• 2015/09/20 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/09/20 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
• 2015/09/20 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/09/18 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
• 2015/09/18 [spctools-discuss] Re: ProteinProphet limitations? Rachel
• 2015/09/18 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/09/16 [spctools-discuss] Display of user defined modifications with spectraST Library Viewer not possible Sarah P.
• 2015/09/15 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
• 2015/09/14 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/09/14 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/09/13 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/09/11 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
• 2015/09/11 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/09/11 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/09/10 [spctools-discuss] Re: ProteinProphet limitations? [email protected]
• 2015/09/10 Re: [spctools-discuss] ProteinProphet limitations? David Shteynberg
• 2015/09/09 [spctools-discuss] ProteinProphet limitations? [email protected]
• 2015/09/01 [spctools-discuss] Can't compile TPP-4.8.0 on Fedora Linux windenthusiast
• 2015/08/27 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
• 2015/08/26 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/08/25 Re: [spctools-discuss] Re: how many files can I merge in iprophet? David Shteynberg
• 2015/08/24 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/08/24 [spctools-discuss] Re: how many files can I merge in iprophet? Rachel
• 2015/08/24 Re: [spctools-discuss] Dimethylation labeling analysis using Coemt azelanis
• 2015/08/23 Re: [spctools-discuss] Dimethylation labeling analysis using Coemt Jimmy Eng
• 2015/08/23 [spctools-discuss] Dimethylation labeling analysis using Coemt azelanis
• 2015/08/19 [spctools-discuss] How to create spectral library from merged mzXML and pep.xml file created on PD1.4 by SpectraST? waovoo
• 2015/08/17 [spctools-discuss] Re: Xinteract non-zero exit code: 34304 ruhe
• 2015/08/17 Re: [spctools-discuss] Re: Xinteract non-zero exit code: 34304 David Shteynberg
• 2015/08/16 [spctools-discuss] Re: Moscot to pepXML can't see spectra [email protected]
• 2015/08/13 [spctools-discuss] Moscot to pepXML can't see spectra [email protected]
• 2015/08/12 Re: [spctools-discuss] [solved] compiling TPP 4.8.0 on "exotic" 64bit linux (massypup64) Joseph Slagel
• 2015/08/12 Re: [spctools-discuss] Xinteract non-zero exit code: 34304 David Shteynberg
• 2015/08/12 [spctools-discuss] Xinteract non-zero exit code: 34304 ruhe
• 2015/08/11 [spctools-discuss] [solved] compiling TPP 4.8.0 on "exotic" 64bit linux (massypup64) Robert
• 2015/08/10 Re: [spctools-discuss] Tide & PeptideProphet Han Hu
• 2015/08/07 Re: [spctools-discuss] Tide & PeptideProphet David Shteynberg
• 2015/08/07 Re: [spctools-discuss] Tide & PeptideProphet David Shteynberg
• 2015/08/07 [spctools-discuss] Tide & PeptideProphet Han Hu
• 2015/08/06 [spctools-discuss] PepXML format from different search engines. Han Hu
• 2015/08/03 [spctools-discuss] Qualscore - 0 spectra written/NaN coefficients Job van Riet
• 2015/07/28 [spctools-discuss] Recruiting new members for iPRG 2016 Henry Lam
• 2015/07/24 Re: [spctools-discuss] Re: Processing MSGF+ searches Jesse
• 2015/07/24 Re: [spctools-discuss] PTM mod and methylations David Shteynberg
• 2015/07/24 Re: [spctools-discuss] Re: Processing MSGF+ searches David Shteynberg
• 2015/07/24 Re: [spctools-discuss] Re: Processing MSGF+ searches Joseph Slagel
• 2015/07/24 Re: [spctools-discuss] Re: Processing MSGF+ searches David Shteynberg
• 2015/07/24 Re: [spctools-discuss] Re: Processing MSGF+ searches Jesse
• 2015/07/24 Re: [spctools-discuss] Re: Processing MSGF+ searches Jesse
• 2015/07/24 Re: [spctools-discuss] Re: Processing MSGF+ searches David Shteynberg
• 2015/07/23 RE: [spctools-discuss] Re: Processing MSGF+ searches Jesse G Meyer
• 2015/07/23 Re: [spctools-discuss] Re: Processing MSGF+ searches David Shteynberg
• 2015/07/22 [spctools-discuss] Re: Processing MSGF+ searches Jesse
• 2015/07/22 Re: [spctools-discuss] how many files can I merge in iprophet? David Shteynberg
• 2015/07/22 [spctools-discuss] how many files can I merge in iprophet? Rachel
• 2015/07/16 Re: [spctools-discuss] xinteract alternative_proteins that don't contain the peptide Daniel Hyduke
• 2015/07/15 Re: [spctools-discuss] xinteract alternative_proteins that don't contain the peptide Luis Mendoza
• 2015/07/15 [spctools-discuss] xinteract alternative_proteins that don't contain the peptide Daniel Hyduke
• 2015/07/09 [spctools-discuss] Re: Processing MSGF+ searches [email protected]
• 2015/07/09 Re: [spctools-discuss] Processing MSGF+ searches David Shteynberg
• 2015/07/08 [spctools-discuss] Processing MSGF+ searches [email protected]
• 2015/07/07 Re: [spctools-discuss] MS3 quantification hh1985
• 2015/07/07 Re: [spctools-discuss] MS3 quantification Jimmy Eng
• 2015/07/07 [spctools-discuss] MS3 quantification hh1985
• 2015/07/04 Re: [spctools-discuss] Re: Medium/Heavy comparison with XPress Damon May
• 2015/07/03 Re: [spctools-discuss] Re: Medium/Heavy comparison with XPress Damon May
• 2015/07/03 [spctools-discuss] Re: Medium/Heavy comparison with XPress Amit Yadav
• 2015/07/02 [spctools-discuss] Medium/Heavy comparison with XPress Damon May
• 2015/07/01 Re: [spctools-discuss] X!Tandem/TPP adding modifications not specified zeyu sun
• 2015/06/26 Re: [spctools-discuss] .Raw to .DTA or .PKL Luis Mendoza
• 2015/06/25 [spctools-discuss] .Raw to .DTA or .PKL Avantika Dhabaria
• 2015/06/25 [spctools-discuss] Problem(pr9) Rachel
• 2015/06/16 [spctools-discuss] MacOS installation Stephan Michalik
• 2015/06/15 [spctools-discuss] RE: Need your suggestion on TPP Eric Deutsch
• 2015/06/15 [spctools-discuss] error during mzML-conversion Dominique T
• 2015/06/14 [spctools-discuss] Mascot.dat -> pepxml. How long should it take? SD
• 2015/06/08 Re: [spctools-discuss] PTM mod and methylations delphine wood
• 2015/06/05 Re: [spctools-discuss] Re: Problems building boost inside TPP Amin Momin
• 2015/06/05 Re: [spctools-discuss] PTM mod and methylations David Shteynberg
• 2015/06/05 [spctools-discuss] Re: PTM mod and methylations Delphine
• 2015/06/04 Re: [spctools-discuss] Re: Problems building boost inside TPP Joseph Slagel
• 2015/06/04 Re: [spctools-discuss] Re: Problems building boost inside TPP Amin Momin
• 2015/06/04 Re: [spctools-discuss] Re: Problems building boost inside TPP Joseph Slagel
• 2015/06/04 Re: [spctools-discuss] Re: Problems building boost inside TPP Amin Momin
• 2015/06/04 [spctools-discuss] RE: Information TPP analysis Eric Deutsch
• 2015/06/04 Re: [spctools-discuss] TPP-4.8.0 compilation error (Linux 64bit): undefined reference to `gdImagePngPtr' Joseph Slagel
• 2015/06/03 Re: [spctools-discuss] TPP-4.8.0 compilation error (Linux 64bit): undefined reference to `gdImagePngPtr' Robert Winkler
• 2015/06/02 Re: [spctools-discuss] TPP-4.8.0 compilation error (Linux 64bit): undefined reference to `gdImagePngPtr' Jimmy Eng
• 2015/06/02 [spctools-discuss] TPP-4.8.0 compilation error (Linux 64bit): undefined reference to `gdImagePngPtr' Robert
• 2015/06/02 Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available Joseph Slagel
• 2015/06/01 Re: [spctools-discuss] TPP @ ASMS -- booth #56 David Shteynberg
• 2015/06/01 [spctools-discuss] TPP @ ASMS -- booth #56 Luis Mendoza
• 2015/06/01 Re: [spctools-discuss] Re: ASAPRatio Problem David Shteynberg
• 2015/06/01 [spctools-discuss] Re: ASAPRatio Problem Xabier Martinez De Morentin
• 2015/05/31 Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available Mohammad T Islam
• 2015/05/29 Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available Joseph Slagel
• 2015/05/29 Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available Mohammad T Islam
• 2015/05/29 Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available Joseph Slagel
• 2015/05/28 [spctools-discuss] Re: TPP 4.8.0 Release is now available MD
• 2015/05/26 RE: [spctools-discuss] X!Tandem/TPP adding modifications not specified Eric Deutsch
• 2015/05/26 [spctools-discuss] Re: TPP 4.7.0 installation problems on Ubuntu 14.04 MD
• 2015/05/22 Re: [spctools-discuss] X!Tandem/TPP adding modifications not specified Joshua Dunham
• 2015/05/18 Re: [spctools-discuss] InteractParser mangles myrimatch pep.xml Daniel Hyduke
• 2015/05/18 [spctools-discuss] Using Proteome Discoverer to identify phosphopeptides fragmented by CID Siyuan Su
• 2015/05/15 Re: [spctools-discuss] InteractParser mangles myrimatch pep.xml David Shteynberg
• 2015/05/15 [spctools-discuss] InteractParser mangles myrimatch pep.xml Daniel Hyduke
• 2015/05/14 Re: [spctools-discuss] PTM prophet unknown mod David Shteynberg
• 2015/05/08 Re: [spctools-discuss] PTM Prophet on itraq data David Shteynberg
• 2015/05/08 [spctools-discuss] process triple labeled data with TPP-skyline? zeyu sun
• 2015/05/05 [spctools-discuss] Next TPP course in Vancouver, Canada September 22-25 Eric Deutsch
• 2015/05/04 Re: [spctools-discuss] Re: Any tips on how to analyzed triple labeled data? Alejandro
• 2015/05/04 [spctools-discuss] Libra problem alexandra . szopinska
• 2015/05/01 Re: [spctools-discuss] Re: Any tips on how to analyzed triple labeled data? Jimmy Eng
• 2015/05/01 Re: [spctools-discuss] PTM prophet unknown mod David Shteynberg
• 2015/05/01 Re: [spctools-discuss] Comet/tandem search on isobaric data zeyu sun
• 2015/04/30 [spctools-discuss] Re: Any tips on how to analyzed triple labeled data? Damon May
• 2015/04/30 RE: [spctools-discuss] Comet/tandem search on isobaric data Eric Deutsch
• 2015/04/30 Re: [spctools-discuss] PTM prophet unknown mod delphine wood
• 2015/04/29 Re: [spctools-discuss] Anyone know some way to convert mascote format (mass) to Fasta? Jimmy Eng
• 2015/04/29 [spctools-discuss] Anyone know some way to convert mascote format (mass) to Fasta? Leandro de Mattos
• 2015/04/29 Re: [spctools-discuss] PTM prophet unknown mod David Shteynberg
• 2015/04/26 [spctools-discuss] Comet/tandem search on isobaric data zeyu sun
• 2015/04/24 [spctools-discuss] Re: Any tips on how to analyzed triple labeled data? Alejandro
• 2015/04/22 Re: [spctools-discuss] how to continue or kill my jobs? c qin
• 2015/04/22 [spctools-discuss] Re: TPP 4.8.0 Release is now available Vladimir Gorshkov
• 2015/04/21 RE: [spctools-discuss] Any tips on how to analyzed triple labeled data? Eric Deutsch
• 2015/04/21 Re: [spctools-discuss] Any tips on how to analyzed triple labeled data? Brian Hampton
• 2015/04/21 RE: [spctools-discuss] pep probability near to zero Eric Deutsch
• 2015/04/21 [spctools-discuss] Any tips on how to analyzed triple labeled data? Alejandro
• 2015/04/20 [spctools-discuss] pep probability near to zero andreas . otto
• 2015/04/20 RE: [spctools-discuss] how to build/add small peptide (4-6amino acid) library? Eric Deutsch
• 2015/04/20 Re: [spctools-discuss] Re: ProteoGrapher David Shteynberg
• 2015/04/20 [spctools-discuss] Re: ProteoGrapher andreas . otto
• 2015/04/20 Re: [spctools-discuss] ProteoGrapher David Shteynberg
• 2015/04/18 Re: [spctools-discuss] how to continue or kill my jobs? Jimmy Eng
• 2015/04/18 Re: [spctools-discuss] how to continue or kill my jobs? c qin
• 2015/04/15 Re: [spctools-discuss] how to continue or kill my jobs? Jimmy Eng
• 2015/04/15 Re: [spctools-discuss] how to continue or kill my jobs? c qin
• 2015/04/14 Re: [spctools-discuss] how to continue or kill my jobs? Jimmy Eng
• 2015/04/14 Re: [spctools-discuss] how to continue or kill my jobs? c qin
• 2015/04/14 [spctools-discuss] ASPRatio not assigning correct mass values to chemically labeled residues Brian Hampton
• 2015/04/14 [spctools-discuss] relocatable binaries for TPP Björn Grüning
• 2015/04/14 [spctools-discuss] TPP binaries for HPC Björn Grüning
• 2015/04/14 [spctools-discuss] PTM Prophet on itraq data Filip
• 2015/04/13 Re: [spctools-discuss] how to continue or kill my jobs? c qin
• 2015/04/13 [spctools-discuss] About adaptive LDA-EM Honglan Li
• 2015/04/13 [spctools-discuss] ProteoGrapher andreas . otto
• 2015/04/12 Re: [spctools-discuss] how to continue or kill my jobs? 钟传奇
• 2015/04/12 [spctools-discuss] I cannot continue or kill my job... c qin
• 2015/04/12 [spctools-discuss] how to continue or kill my jobs? c qin
• 2015/04/09 [spctools-discuss] how to build/add small peptide (4-6amino acid) library? Eileen Yue
• 2015/04/08 [spctools-discuss] ** Strange spectrum format (Day_Mon_Time_YY...) in *.pep.xml Vishal Swaroop
• 2015/04/04 [spctools-discuss] Input for PeptideProphet Sinjini Sikdar
• 2015/04/03 [spctools-discuss] Re: How-To get Petunia TPP working with a network share as data directory Ruby
• 2015/04/02 [spctools-discuss] Q3ProteinRatioParser Josh Eckels
• 2015/03/30 Re: [spctools-discuss] pepXML conversion David Baxter
• 2015/03/28 [spctools-discuss] Libra quantification Henry Rodríguez
• 2015/03/26 Re: [spctools-discuss] protxml and MAYU hh1985
• 2015/03/26 Re: [spctools-discuss] protxml and MAYU hh1985
• 2015/03/25 Re: [spctools-discuss] protxml and MAYU Luis Mendoza
• 2015/03/25 [spctools-discuss] Re: TPP 4.8.0 Release is now available Alfonso Olaya Abril
• 2015/03/24 Re: [spctools-discuss] protxml and MAYU 钟传奇
• 2015/03/24 [spctools-discuss] protxml and MAYU hh1985
• 2015/03/23 Re: [spctools-discuss] pepXML conversion David Shteynberg
• 2015/03/23 Re: [spctools-discuss] pepXML conversion David Baxter
• 2015/03/22 Re: [spctools-discuss] pepXML conversion David Baxter
• 2015/03/22 Re: [spctools-discuss] how to shown ASAPratio value in ProtXML viewer? zeyu sun
• 2015/03/20 Re: [spctools-discuss] how to shown ASAPratio value in ProtXML viewer? Luis Mendoza
• 2015/03/20 Re: [spctools-discuss] pepXML conversion David Shteynberg
• 2015/03/20 [spctools-discuss] PepXML Conversion Error David Baxter
• 2015/03/20 [spctools-discuss] pepXML conversion David Baxter
• 2015/03/20 Re: [spctools-discuss] Less protein IDs after running iProphet Florian
• 2015/03/18 Re: [spctools-discuss] sequence attributed to a "wrong" protein after combining pepxml Luis Mendoza
• 2015/03/18 [spctools-discuss] Re: ASAPRatio parameters zeyu sun

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