Hi David,
I've been meaning to ask, what's being calculated in this part of
PeptideProphet:

results for charge 2: -7.19405 adj_ion_mean and 15.0557 adj_ion_hom
mean
62.9988id mean0.906181 correlation (r)
2+ ion - id = 0.965428*(ion - hom) + -21.7292 with error = 5.12625

Best,
John


On Feb 8, 1:32 am, Jagan Kommineni <[email protected]> wrote:
> David,
>
> I have updated our installation version of TPP with the latest version of
> the TPP. This bug has disappeared.
>
> Thanks for your suggestion.
>
> with regards,
>
> Jagan
>
> On Tue, Feb 8, 2011 at 6:06 AM, David Shteynberg <
>
> [email protected]> wrote:
> > Hi Jagan,
>
> > Thanks for the thorough bug report.  Have you tried the latest version? The
> > RT or PI models had bug that have been fixed since July.   Also if you want
> > to upload these search results I can try tracing the latest code on it.
>
> > Cheers,
> > -David

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