I am running the TPP on a windows 7 machine. I used the command line to convert (using msconvert) a .mgf file to a .mzXML format for processing.
I have examined the resulting mzXML file from the conversion and it contains what appears to be valid data and has msLevel=2 included so I am certain it is tandem. I did not run the experiment myself so I cannot be certain of the protocol implemented. I am using a FASTA format database to search against and I am using a default tandem parameters file. When I attempt to execute the X! Tandem search of the data, I receive the following error: run_in c:/Inetpub/wwwroot/ISB/data/Test; c:\Inetpub\tpp-bin\tandem c:/ Inetpub/wwwroot/ISB/data/Test/test.tandem.params X! TANDEM 2009.10.01.1 (LabKey and ISB) Loading spectra . loaded. No input spectra met the acceptance criteria. command "c:\Inetpub\tpp-bin\tandem c:/Inetpub/wwwroot/ISB/data/Test/ test.tandem.params" failed: Operation not permitted Command FAILED Any thoughts on the cause? Thanks in advance. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
