Hi, I have a question on the prot.xml. It seems like each protein group is a probability and each subgroup (those with group_sibling_id="a", "b", etc) has a probability.
<protein_group group_number="1" probability="1.0000"> <protein protein_name="DECOY_40330" n_indistinguishable_proteins="1" probability="1.0000" percent_coverage="2.9" unique_stripped_peptides="LMVSNQFK+NMMTIETNSSTSVVSPRASTAR" group_sibling_id="a" total_number_peptides="8" pct_spectrum_ids="0.019" confidence="0.004"> How is the probability for the protein_group determined? I came across cases where all the subgroup probabilities are 0 but the protein_group probability is 1.0. How do I explain this? Thanks, LW -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
