spctools-discuss

Messages by Date

2017/04/06 RE: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8 Eric Deutsch
2017/04/06 [spctools-discuss] Parameters in X!tandem inputfile for itraq 8 richard chiang
2017/04/06 Re: [spctools-discuss] Automatic spectral library download not working? sfghuis
2017/04/06 [spctools-discuss] Extended TMT multiplexing Phil
2017/04/05 Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Joey Davis
2017/04/05 Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Luis Mendoza
2017/04/05 Re: [spctools-discuss] Automatic spectral library download not working? Luis Mendoza
2017/04/05 [spctools-discuss] Automatic spectral library download not working? sfghuis
2017/04/04 Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Joey Davis
2017/04/04 Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? Chih-Chiang Tsou
2017/04/04 Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? David Shteynberg
2017/04/04 Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? Chih-Chiang Tsou
2017/04/04 Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? David Shteynberg
2017/04/04 Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? Chih-Chiang Tsou
2017/04/04 Re: [spctools-discuss] qualscore mzXML parse error Jason Winget
2017/04/04 Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? David Shteynberg
2017/04/04 [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? Chih-Chiang Tsou
2017/03/17 RE: [spctools-discuss] tpp_gui.pl: Error: invoking tpp_hostname to look up installation property 'HomePath!' Eric Deutsch
2017/03/17 Re: [spctools-discuss] tpp_gui.pl: Error: invoking tpp_hostname to look up installation property 'HomePath!' Luis Mendoza
2017/03/17 Re: [spctools-discuss] prevent xinteract from creating output? Luis Mendoza
2017/03/17 Re: [spctools-discuss] No rule to make target `/usr/local/tpp/bin/crypt', needed by `install'. Stop. Luis Mendoza
2017/03/17 Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Luis Mendoza
2017/03/17 Re: [spctools-discuss] TPP Peptide prophet – XInteract, error when using the .comet.pep.xml file but not with the corresponding .tandem file Luis Mendoza
2017/03/17 Re: [spctools-discuss] Export to Spreadsheet function doesn't work Luis Mendoza
2017/03/17 Re: [spctools-discuss] URL /tpp/cgi-bin/tpp/cgi-bin/tpp_gui.pl was not found Luis Mendoza
2017/03/14 [spctools-discuss] Comet search of data on D:\ [Windows 10] error Joey Davis
2017/03/09 [spctools-discuss] TPP Peptide prophet – XInteract, error when using the .comet.pep.xml file but not with the corresponding .tandem file Murielle Ålund
2017/03/08 [spctools-discuss] Export to Spreadsheet function doesn't work David Zhao
2017/03/06 Re: [spctools-discuss] spectraST error yuderuii
2017/03/05 RE: [spctools-discuss] Database search of heavy isotope labeled peptides Eric Deutsch
2017/03/03 [spctools-discuss] Database search of heavy isotope labeled peptides Sim Kae Hwan
2017/03/02 Re: [spctools-discuss] Re: Libra quantification Jimmy Eng
2017/03/02 Re: [spctools-discuss] Re: Libra quantification Chris Barnes
2017/03/02 [spctools-discuss] URL /tpp/cgi-bin/tpp/cgi-bin/tpp_gui.pl was not found Robert
2017/03/01 [spctools-discuss] How does RT model in PeptideProphet work? Ali
2017/03/01 Re: [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file) Mike Rightmire
2017/03/01 RE: [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file) Eric Deutsch
2017/03/01 Re: [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file) Mike Rightmire
2017/03/01 RE: [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file) Eric Deutsch
2017/03/01 [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file) Mike Rightmire
2017/03/01 [spctools-discuss] tandem.exe command line parameters (other than the input.xml file) Mike Rightmire
2017/02/21 [spctools-discuss] tpp_gui.pl: Error: invoking tpp_hostname to look up installation property 'HomePath!' Mike Rightmire
2017/02/15 [spctools-discuss] No rule to make target `/usr/local/tpp/bin/crypt', needed by `install'. Stop. Mike Rightmire
2017/02/14 [spctools-discuss] prevent xinteract from creating output? Jesse
2017/02/14 Re: [spctools-discuss] TPP update paths, return code 512, printscreen attached michaela . filiou
2017/02/08 Re: [spctools-discuss] Problems installing TPP 5.0 on Linux Luis Mendoza
2017/02/08 Re: [spctools-discuss] Problems installing TPP 5.0 on Linux Cedar McKay
2017/02/08 Re: [spctools-discuss] TPP 5.0 Compilation problem on Linux(es), TARGET/ pwiz Luis Mendoza
2017/02/07 [spctools-discuss] TPP 5.0 Compilation problem on Linux(es), TARGET/ pwiz Robert
2017/02/02 Re: [spctools-discuss] msconvert not working with TPP 5.0 on windows Cedar McKay
2017/02/02 Re: [spctools-discuss] Comet search not working in TPP; return code: 256 Francesca Barry
2017/02/02 Re: [spctools-discuss] Comet search not working in TPP; return code: 256 Luis Mendoza
2017/02/02 Re: [spctools-discuss] msconvert not working with TPP 5.0 on windows Luis Mendoza
2017/02/02 Re: [spctools-discuss] Problems installing TPP 5.0 on Linux Luis Mendoza
2017/02/02 [spctools-discuss] Problems installing TPP 5.0 on Linux Cedar McKay
2017/02/02 [spctools-discuss] msconvert not working with TPP 5.0 on windows Cedar McKay
2017/02/02 [spctools-discuss] TPP update paths error, return code 512 michaela . filiou
2017/02/02 [spctools-discuss] update paths, command failed, return code:512 Michaela Filiou
2017/01/30 [spctools-discuss] Spectra assignment in libra/peptideprophet Veit Schwaemmle
2017/01/24 Re: [spctools-discuss] Error while conversion of files Jimmy Eng
2017/01/24 Re: [spctools-discuss] Error while conversion of files Luis Mendoza
2017/01/24 RE: [spctools-discuss] Error while conversion of files Eric Deutsch
2017/01/24 RE: [spctools-discuss] Error while conversion of files Eric Deutsch
2017/01/24 Re: [spctools-discuss] Data file on a network drive? Vis Sw
2017/01/24 Re: [spctools-discuss] Error while conversion of files Joel Christie
2017/01/24 Re: [spctools-discuss] Data file on a network drive? Chris Barnes
2017/01/23 Re: [spctools-discuss] Data file on a network drive? Vis Sw
2017/01/23 Re: [spctools-discuss] Data file on a network drive? Luis Mendoza
2017/01/23 [spctools-discuss] Data file on a network drive? Chris Barnes
2017/01/23 Re: [spctools-discuss] Query regarding searching in Comet in TPP Jimmy Eng
2017/01/23 Re: [spctools-discuss] ProteinPilot-Search -> PepXML -> PeptideProphet David Shteynberg
2017/01/23 [spctools-discuss] ProteinPilot-Search -> PepXML -> PeptideProphet Ivan Silbern
2017/01/20 Re: [spctools-discuss] PeptideProphetParser error on Kojak searches David Shteynberg
2017/01/20 RE: [spctools-discuss] Error while conversion of files Eric Deutsch
2017/01/20 [spctools-discuss] Re: pepxml to mzid file conversion Francesca Barry
2017/01/20 [spctools-discuss] PeptideProphetParser error on Kojak searches Van Kelly
2017/01/19 Re: [spctools-discuss] SQT file to text file Jimmy Eng
2017/01/19 Re: [spctools-discuss] SQT file to text file gaurav saxena
2017/01/18 Re: [spctools-discuss] SQT file to text file Jimmy Eng
2017/01/18 [spctools-discuss] SQT file to text file gaurav saxena
2017/01/17 Re: [spctools-discuss] pepxml to mzid file conversion Robert Winkler
2017/01/16 [spctools-discuss] pepxml to mzid file conversion Francesca Barry
2017/01/12 RE: [spctools-discuss] Re: Spectrast slow processing with .msp file under Linux Eric Deutsch
2017/01/12 [spctools-discuss] Re: Spectrast slow processing with .msp file under Linux Jianqiao Shen
2017/01/11 RE: [spctools-discuss] Spectrast slow processing with .msp file under Linux Eric Deutsch
2017/01/11 [spctools-discuss] Spectrast slow processing with .msp file under Linux Jianqiao Shen
2017/01/05 Re: [spctools-discuss] RT and RTCAT options in PeptideProphet Ali
2017/01/05 Re: [spctools-discuss] RT and RTCAT options in PeptideProphet David Shteynberg
2017/01/05 [spctools-discuss] RT and RTCAT options in PeptideProphet Ali
2017/01/05 Re: [spctools-discuss] PeptideProphet/iProphet Probability Distribution Ali
2017/01/04 [spctools-discuss] query on TPP(X!Tandem) PRATIP SAHA
2017/01/04 RE: [spctools-discuss] PeptideProphet/iProphet Probability Distribution Eric Deutsch
2017/01/04 Re: [spctools-discuss] PeptideProphet/iProphet Probability Distribution Ali
2017/01/04 Re: [spctools-discuss] PeptideProphet/iProphet Probability Distribution Ali
2017/01/04 Re: [spctools-discuss] Is QualScore still shipped with/supported by the TPP? Jason
2017/01/04 RE: [spctools-discuss] Is QualScore still shipped with/supported by the TPP? Eric Deutsch
2017/01/03 RE: [spctools-discuss] PeptideProphet/iProphet Probability Distribution Eric Deutsch
2017/01/03 Re: [spctools-discuss] PeptideProphet/iProphet Probability Distribution David Shteynberg
2017/01/03 [spctools-discuss] Is QualScore still shipped with/supported by the TPP? Jason Winget
2017/01/02 [spctools-discuss] PeptideProphet/iProphet Probability Distribution Ali
2016/12/22 Re: [spctools-discuss] PeptideProphet Probability vs. Posterior Error Probability (How to compare) Ali
2016/12/20 Re: [spctools-discuss] PeptideProphet Probability vs. Posterior Error Probability (How to compare) David Shteynberg
2016/12/20 [spctools-discuss] PeptideProphet Probability vs. Posterior Error Probability (How to compare) Ali
2016/12/16 Re: [spctools-discuss] DatabaseParser error David Shteynberg
2016/12/16 [spctools-discuss] DatabaseParser error HFaz
2016/12/13 [spctools-discuss] Re: How does CLIPPER work uadk
2016/12/12 [spctools-discuss] How does CLIPPER work Cedric Leduc
2016/12/08 [spctools-discuss] Protein Prophet - Probability and Xpress Bindiya Sachdev
2016/12/07 Re: [spctools-discuss] Return code : 65280 David Shteynberg
2016/12/07 [spctools-discuss] TPP-Analyze Proteins Bindiya Sachdev
2016/12/03 Re: [spctools-discuss] DiscoFilter David Shteynberg
2016/12/03 [spctools-discuss] DiscoFilter Kamal Mandal
2016/12/02 Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Luis M
2016/12/02 Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
2016/12/02 Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
2016/12/02 Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
2016/11/30 Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Luis Mendoza
2016/11/30 Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
2016/11/29 Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Luis Mendoza
2016/11/29 Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
2016/11/28 Re: [spctools-discuss] Unable to access xml file via webserver For TPP5 on Ubuntu 16.04 Roden Luo
2016/11/28 Re: [spctools-discuss] Re: Install TPP v5.0.0 on Ubuntu 16.04.1 LTS Linux Roden Luo
2016/11/23 Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
2016/11/23 Re: [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Luis Mendoza
2016/11/23 [spctools-discuss] Re: No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
2016/11/22 Re: [spctools-discuss] No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
2016/11/21 Re: [spctools-discuss] Unable to access xml file via webserver For TPP5 on Ubuntu 16.04 Luis Mendoza
2016/11/21 Re: [spctools-discuss] Re: Install TPP v5.0.0 on Ubuntu 16.04.1 LTS Linux Jimmy Eng
2016/11/21 Re: [spctools-discuss] No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Luis Mendoza
2016/11/21 [spctools-discuss] No Access to error/sensitivity tables or Legacy Viewed on TPP V5.0 Kevin Hart
2016/11/17 [spctools-discuss] Re: Install TPP v5.0.0 on Ubuntu 16.04.1 LTS Linux Roden Luo
2016/11/16 [spctools-discuss] Unable to access xml file via webserver For TPP5 on Ubuntu 16.04 Roden Luo
2016/11/16 [spctools-discuss] Install TPP v5.0.0 on Ubuntu 16.04.1 LTS Linux Roden Luo
2016/11/15 [spctools-discuss] Re: Unexpected extension in an input file with TPP v4.6 OCCUPY RC7 rev 3 Cedric Leduc
2016/10/28 [spctools-discuss] conversion of iProphet data for submission to PRIDE Adam Oberstein
2016/10/20 [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Ali
2016/10/20 [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Jean-Christophe Ducom
2016/10/19 [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Ali
2016/10/19 [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Jean-Christophe Ducom
2016/10/19 [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Ali
2016/10/19 [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Ali
2016/10/18 [spctools-discuss] Re: TPP v5.0 Installation Error on Linux Jean-Christophe Ducom
2016/10/17 [spctools-discuss] TPP v5.0 Installation Error on Linux Ali
2016/10/14 Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 Veit Schwaemmle
2016/10/14 Re: [spctools-discuss] Re: PTMProphet Problems in TPP 5.0.0 David Shteynberg
2016/10/14 [spctools-discuss] Re: PTMProphet Problems in TPP 5.0.0 Veit Schwaemmle
2016/10/14 Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 David Shteynberg
2016/10/14 [spctools-discuss] PTMProphet Problems in TPP 5.0.0 [email protected]
2016/10/13 Re: [spctools-discuss] Bug in XML encoding in Mascot2XML Luis Mendoza
2016/10/12 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
2016/10/12 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
2016/10/12 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
2016/10/12 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
2016/10/12 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
2016/10/12 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
2016/10/12 [spctools-discuss] Proteome Discoverer 2.0 exported pep.xml does not work with PeptideProphet Ali
2016/10/12 [spctools-discuss] Re: How to create spectral library from merged mzXML and pep.xml file created on PD1.4 by SpectraST? Ali
2016/10/11 [spctools-discuss] TPP 5.0.0 Release is now available Luis Mendoza
2016/10/05 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
2016/10/05 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
2016/10/05 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
2016/10/05 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
2016/10/05 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
2016/10/05 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
2016/10/04 Re: [spctools-discuss] Decoy database issue Luis Mendoza
2016/10/04 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
2016/10/04 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
2016/10/04 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
2016/10/03 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
2016/10/03 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
2016/10/03 Re: [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results David Shteynberg
2016/10/03 [spctools-discuss] PeptideProphet returns zero probability for all of the X!Tandem search results Ali
2016/09/28 [spctools-discuss] Bug in XML encoding in Mascot2XML Josh Eckels
2016/09/20 Re: [spctools-discuss] Re: Question About iprophet/Spectral library Ali
2016/09/20 Re: [spctools-discuss] Re: Question About iprophet/Spectral library David Shteynberg
2016/09/20 Re: [spctools-discuss] Re: Question About iprophet/Spectral library Ali
2016/09/20 Re: [spctools-discuss] Re: Question About iprophet/Spectral library David Shteynberg
2016/09/20 [spctools-discuss] Re: Question About iprophet/Spectral library Ali
2016/09/20 Re: [spctools-discuss] Question About iprophet/Spectral library Ali
2016/09/20 Re: [spctools-discuss] Question About iprophet/Spectral library Ali
2016/09/20 RE: [spctools-discuss] Question About iprophet/Spectral library Eric Deutsch
2016/09/19 Re: [spctools-discuss] Question About iprophet/Spectral library 钟传奇
2016/09/19 Re: [spctools-discuss] Question About iprophet/Spectral library Ali
2016/09/19 Re: [spctools-discuss] Question About iprophet/Spectral library 钟传奇
2016/09/19 [spctools-discuss] Question About iprophet/Spectral library Ali
2016/09/18 [spctools-discuss] Decoy database issue Min Huang
2016/09/15 [spctools-discuss] Re: Proteome Discoverer 2.0 - result files Fernanda Salvato
2016/09/09 [spctools-discuss] Re: Proteome Discoverer 2.0 - result files Jason Winget
2016/09/08 [spctools-discuss] Proteome Discoverer 2.0 - result files Fernanda Salvato
2016/09/07 [spctools-discuss] TPP 4.8.0 compile problem with boost library on CentOS 6.8 joe2323
2016/09/05 Re: [spctools-discuss] Does SpectraST use Retention Time in it's search? Ali
2016/09/05 Re: [spctools-discuss] Does SpectraST use Retention Time in it's search? David Shteynberg
2016/09/04 [spctools-discuss] Does SpectraST use Retention Time in it's search? Ali
2016/08/31 Re: [spctools-discuss] Re: Problem when Creating a library in Spectrast Ali
2016/08/31 RE: [spctools-discuss] Re: Problem when Creating a library in Spectrast Eric Deutsch
2016/08/31 Re: [spctools-discuss] Re: Problem when Creating a library in Spectrast Ali
2016/08/31 Re: [spctools-discuss] Re: Problem when Creating a library in Spectrast Ali
2016/08/31 RE: [spctools-discuss] Re: Problem when Creating a library in Spectrast Eric Deutsch
2016/08/31 RE: [spctools-discuss] Re: Problem when Creating a library in Spectrast Eric Deutsch
2016/08/31 [spctools-discuss] Re: Problem when Creating a library in Spectrast Ali