Does anyone know how PeptideProphet generates the discriminant score when it gets an input from Crux, for instance the qranker.target.pep.xml output. These files contain a q-ranker_score and a q_ranker_q_value as well as delta_cn and Xcorr_score.
Which of these statistics are used to generate the probability score in the interact.pep.xml output. Where can I find a formula for this calculation. Does the same hold for percolator? -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
