Dear All: When I convert the Mascot .dat to .pep.xml., TPP seems block, the output message is as following, (There is no message in spectrast.log) Could anyone please give me some hints?
thanks a lot! Sincerely. zion ---------------------- # Commands for session OZ2ENA2KB on Wed Oct 5 14:02:13 2011 # BEGIN COMMAND BLOCK ###### BEGIN Command Execution ###### [Wed Oct 5 14:02:13 2011] EXECUTING: run_in c:/Inetpub/wwwroot/ISB/ data; c:\Inetpub\tpp-bin\Mascot2XML c:/Inetpub/wwwroot/ISB/data/ 110729ir03-IMACE-1.dat -Dc:/Inetpub/wwwroot/ISB/data/ SwissProt_57.15.fasta -Etrypsin OUTPUT: filepath: c:/Inetpub/wwwroot/ISB/data/, extn: 110729ir03-IMACE-1 A stored as 71.0371 B stored as 114.535 C stored as 160.031 D stored as 115.027 E stored as 129.043 F stored as 147.068 G stored as 57.0215 H stored as 137.059 I stored as 113.084 J stored as 0 K stored as 128.095 L stored as 113.084 M stored as 131.04 N stored as 114.043 O stored as 0 P stored as 97.0528 Q stored as 128.059 R stored as 156.101 S stored as 87.032 T stored as 101.048 U stored as 150.954 V stored as 99.0684 W stored as 186.079 X stored as 111 Y stored as 163.063 Z stored as 128.551 c stored as 17.0027 n stored as 1.00782 variable modification 1, delta mass 15.9949 for Oxidation (M): residues: M nterm: 0 cterm: 0 protterm: 0 variable modification 2, delta mass 79.9663 for Phospho (ST): residues: ST nterm: 0 cterm: 0 protterm: 0 variable modification 3, delta mass 79.9663 for Phospho (Y): residues: Y nterm: 0 cterm: 0 protterm: 0 -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
