Hi again, I am trying to follow the SEQUEST data analysis tutorial in the following link http://tools.proteomecenter.org/wiki/index.php?title=TPP_Tutorial I am having problem with opening my converted pepXML files in pepXML viewer. Below are the screenshots of what is happening (click on the picture to zoom in): This screenshot shows my conversion settings http://flic.kr/p/atDywi This is the log file I got after the commands are completed (same with all six output files) http://flic.kr/p/atGeEs Here's what happens when I tried to opening one of them via the "View" option in the output files pane http://flic.kr/p/atDyh8 Any suggestion is appreciated. Thanks!
Regards, Chris On Oct 7, 8:13 am, Chris L <[email protected]> wrote: > Hi Luis, > > Yes, I overlooked it. Setting it to SEQUEST solved the problem. Thanks > a lot! > ps. It is my first time using TPP, so I get to have some leeway > right? :) > > Regards, > Chris > > On Oct 6, 5:52 pm, Luis Mendoza <[email protected]> > wrote: > > > > > > > > > Hi Chris, > > Which tutorial are you referring to? Please also note that you must set the > > "pipeline type" to "Sequest" on the home page if you wish to convert .out > > files to pepXML; leaving it set to "Tandem" will tell the software to only > > look for files of that type. > > Cheers, > > --Luis > > > On Thu, Oct 6, 2011 at 5:48 PM, Chris L <[email protected]> wrote: > > > Dear all, > > > > I am attempting the tutorial steps for TPP. The tutorial instructed me > > > to choose .out files to convert to pepXML; however, the TPP shows it > > > cannot detect compatible file (.tandem) I am wondering whether I am > > > suppose to convert .out files into .tandem files, or should I try > > > downloading .tandem files somewhere? Any input is appreciated. Thank > > > you. > > > > Sincerely, > > > Chris L > > > > -- > > > You received this message because you are subscribed to the Google Groups > > > "spctools-discuss" group. > > > To post to this group, send email to [email protected]. > > > To unsubscribe from this group, send email to > > > [email protected]. > > > For more options, visit this group at > > >http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
