spctools-discuss  

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• [spctools-discuss] Peptide identification using AB SCIEX Raw data Elkan Dong
  • RE: [spctools-discuss] Peptide identification using AB SCIEX Raw data Eric Deutsch
  • RE: [spctools-discuss] Peptide identification using AB SCIEX Raw data Naiping Dong
  • RE: [spctools-discuss] Peptide identification using AB SCIEX Raw data Eric Deutsch
  • RE: [spctools-discuss] Peptide identification using AB SCIEX Raw data Naiping Dong
• [spctools-discuss] x tandem search Command FAILED RETURN CODE:65280 ana G-A
  • Re: [spctools-discuss] x tandem search Command FAILED RETURN CODE:65280 Luis Mendoza
• [spctools-discuss] iProphet command failure (file not found: not created or deleted?) with interact.pep.xml file from MSFragger result Adam R
  • Re: [spctools-discuss] iProphet command failure (file not found: not created or deleted?) with interact.pep.xml file from MSFragger result David Shteynberg
  • Re: [spctools-discuss] iProphet command failure (file not found: not created or deleted?) with interact.pep.xml file from MSFragger result David Shteynberg
  • Re: [spctools-discuss] iProphet command failure (file not found: not created or deleted?) with interact.pep.xml file from MSFragger result Adam R
  • Re: [spctools-discuss] iProphet command failure (file not found: not created or deleted?) with interact.pep.xml file from MSFragger result Adam R
  • Re: [spctools-discuss] iProphet command failure (file not found: not created or deleted?) with interact.pep.xml file from MSFragger result David Shteynberg
• Re: [spctools-discuss] spectrast produces empty output file Hannes Roest
  • RE: [spctools-discuss] spectrast produces empty output file Eric Deutsch
  • Re: [spctools-discuss] spectrast produces empty output file Hannes Röst
  • Re: [spctools-discuss] spectrast produces empty output file Hannes Roest
  • RE: [spctools-discuss] spectrast produces empty output file Eric Deutsch
• [spctools-discuss] spectrast2tsv.py from Aebersold 2015 doesn't generate an output .csv or most of the programmed print messages Steven Shuken
• [spctools-discuss] generating spectral library excluding the negative PSMs from database search Mrwhy2kill
• [spctools-discuss] "ImportError: No module named msproteomicstoolslib.data_structures.aminoacides" When running spectrast2tsv.py Steven Shuken
  • [spctools-discuss] Re: "ImportError: No module named msproteomicstoolslib.data_structures.aminoacides" When running spectrast2tsv.py Hannes Roest
  • [spctools-discuss] Re: "ImportError: No module named msproteomicstoolslib.data_structures.aminoacides" When running spectrast2tsv.py Steven Shuken
• [spctools-discuss] splib to mz(x)ml format 'Peter Cimermancic' via spctools-discuss
  • [spctools-discuss] Re: splib to mz(x)ml format Hannes Roest
  • [spctools-discuss] Re: splib to mz(x)ml format 'Peter Cimermancic' via spctools-discuss
• [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Steven Shuken
  • Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Jimmy Eng
  • Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Steven Shuken
  • Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP David Shteynberg
  • Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Steven Shuken
  • Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Steven Shuken
  • Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Jimmy Eng
  • Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Steven Shuken
  • Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Steven Shuken
• [spctools-discuss] Open heatmap (html) generated with compare proteins tool Alexis Varin
  • Re: [spctools-discuss] Open heatmap (html) generated with compare proteins tool David Shteynberg
  • [spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool Adam R
  • Re: [spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool David Shteynberg
  • Re: [spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool David Shteynberg
  • Re: [spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool David Shteynberg
  • Re: [spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool Adam R
  • Re: [spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool David Shteynberg
  • Re: [spctools-discuss] Open heatmap (html) generated with compare proteins tool Ulrich auf dem Keller
• [spctools-discuss] Opening heatmap (html) generated with compare proteins tool Alexis Varin
• [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database Adam R
  • RE: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database Eric Deutsch
  • Re: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database Adam R
  • Re: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database Jimmy Eng
  • Re: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database Adam R
  • Re: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database Frédéric DELOLME
• [spctools-discuss] StPeter Command Failure TPP v.5.0.1 Adam R
• [spctools-discuss] PTM Prophet Command Failure wicher89
  • Re: [spctools-discuss] PTM Prophet Command Failure David Shteynberg
  • Re: [spctools-discuss] PTM Prophet Command Failure Adam R
  • Re: [spctools-discuss] PTM Prophet Command Failure David Shteynberg
  • Re: [spctools-discuss] PTM Prophet Command Failure Adam R
  • Re: [spctools-discuss] PTM Prophet Command Failure David Shteynberg
  • Re: [spctools-discuss] PTM Prophet Command Failure Adam R
  • Re: [spctools-discuss] PTM Prophet Command Failure Adam R
  • Re: [spctools-discuss] PTM Prophet Command Failure David Shteynberg
  • Re: [spctools-discuss] PTM Prophet Command Failure Adam R
  • Re: [spctools-discuss] PTM Prophet Command Failure Adam R
  • Re: [spctools-discuss] PTM Prophet Command Failure David Shteynberg
• [spctools-discuss] How many proteins to be reported after database searching? lwhbackup
• [spctools-discuss] Spectral library generation_consensus library split Fabia Simona
  • [spctools-discuss] Re: Spectral library generation_consensus library split Fabia Simona
• [spctools-discuss] SpectraST Consensus library unsplit vs. split Fabia Simona
• [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0) Oded
  • Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0) Jimmy Eng
  • Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0) Alejandro
  • Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0) Jimmy Eng
  • Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0) David Shteynberg
  • Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0) Jimmy Eng
• [spctools-discuss] Tandem search engine is getting time out after every single run. Syed Azmal Ali
• RE: [spctools-discuss] TPP Search Software not working with generated mzML files Michael Hoopmann
  • Re: [spctools-discuss] TPP Search Software not working with generated mzML files Connor Hoffmann
  • Re: [spctools-discuss] TPP Search Software not working with generated mzML files Connor Hoffmann
• [spctools-discuss] Error convert The GPM Human library (.hlf) to splib Shadab Ahmad
• [spctools-discuss] TPP v5.0 in Windows 7 not generating images in Xpress nor ASAP report and protxml legacy viewer not working Alejandro
  • [spctools-discuss] Re: TPP v5.0 in Windows 7 not generating images in Xpress nor ASAP report and protxml legacy viewer not working Jimmy Eng
  • Re: [spctools-discuss] Re: TPP v5.0 in Windows 7 not generating images in Xpress nor ASAP report and protxml legacy viewer not working Jimmy Eng
  • Re: [spctools-discuss] Re: TPP v5.0 in Windows 7 not generating images in Xpress nor ASAP report and protxml legacy viewer not working Alejandro
• [spctools-discuss] How to include the iRT in the Library building mode SpecraST Carolina
• [spctools-discuss] PTMProphet -- command line Victoria Lee
  • Re: [spctools-discuss] PTMProphet -- command line David Shteynberg
• [spctools-discuss] Upcoming TPP courses Eric Deutsch
• [spctools-discuss] win10：403 forbidden You don't have permission to access /tpp on this server. ymstep2016
• [spctools-discuss] SpectraST question about different charge states of candidate library spectra and query spectra Jianqiao Shen
  • RE: [spctools-discuss] SpectraST question about different charge states of candidate library spectra and query spectra Eric Deutsch
• [spctools-discuss] Installing TPP on Fedora 25. Failure to build libspareparts.a. Govind Chandra
• [spctools-discuss] Analyze peptides- error Ada A
  • Re: [spctools-discuss] Analyze peptides- error David Shteynberg
  • Re: [spctools-discuss] Analyze peptides- error Elkan Dong
  • Re: [spctools-discuss] Analyze peptides- error David Shteynberg
  • Re: [spctools-discuss] Analyze peptides- error np . dong572
  • Re: [spctools-discuss] Analyze peptides- error Elkan Dong
  • Re: [spctools-discuss] Analyze peptides- error David Shteynberg
  • Re: [spctools-discuss] Analyze peptides- error Darya Laptanovich
• [spctools-discuss] StPeter documentation Brian Hampton
  • [spctools-discuss] Re: StPeter documentation Jason Winget
  • Re: [spctools-discuss] Re: StPeter documentation Hampton, Brian
  • Re: [spctools-discuss] Re: StPeter documentation Filippo GENOVESE
  • Re: [spctools-discuss] Re: StPeter documentation Jason Winget
  • RE: [spctools-discuss] Re: StPeter documentation Michael Hoopmann
  • R: [spctools-discuss] Re: StPeter documentation Filippo GENOVESE
  • Re: R: [spctools-discuss] Re: StPeter documentation Jason
  • Re: [spctools-discuss] Re: StPeter documentation Michael Hoopmann
• [spctools-discuss] TMT 8-plex Libra Condition File Parameters Linh Nguyen
  • Re: [spctools-discuss] TMT 8-plex Libra Condition File Parameters Luis Mendoza
• [spctools-discuss] for rhel based OSes (and tpp devel) - include glibc-static rpm as prerequisite to avoid: "cannot find -lpthread" & similar lejeczek
• [spctools-discuss] TPP 5.0 compilation on CentOS fails Tomas
  • Re: [spctools-discuss] TPP 5.0 compilation on CentOS fails Jimmy Eng
  • Re: [spctools-discuss] TPP 5.0 compilation on CentOS fails Luis Mendoza
• [spctools-discuss] release_5-0-0 build - archive_read_support_filter_lzop.c:434: undefined reference to `lzo1x_decompress_safe lejeczek
• [spctools-discuss] TPP release_5-0-0 compilation (boost) quirk lejeczek
• [spctools-discuss] comet component compliation fails lejeczek
  • Re: [spctools-discuss] comet component compliation fails Jimmy Eng
• [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
  • Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys David Shteynberg
  • Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
  • Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
  • Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys David Shteynberg
  • Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys David Shteynberg
  • Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
  • Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys David Shteynberg
  • Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
  • Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys David Shteynberg
  • Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
  • Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
• [spctools-discuss] TPP @ ASMS -- booth #127 + Tuesday Workshop Luis Mendoza
• [spctools-discuss] Peptide Prophet issues...help! Aeon K
  • Re: [spctools-discuss] Peptide Prophet issues...help! Luis Mendoza
  • [spctools-discuss] Re: Peptide Prophet issues...help! David Lauenstein
• [spctools-discuss] iProphet process Yaarub Musa
  • Re: [spctools-discuss] iProphet process David Shteynberg
  • [spctools-discuss] Re: iProphet process Yaarub Musa
  • Re: [spctools-discuss] Re: iProphet process David Shteynberg
  • [spctools-discuss] Re: iProphet process Yaarub Musa
• [spctools-discuss] Unable to kill command 6416! () Yaarub Musa
  • Re: [spctools-discuss] Unable to kill command 6416! () Luis Mendoza
  • Re: [spctools-discuss] Unable to kill command 6416! () Yaarub Musa
• [spctools-discuss] Can't open spctools wiki xu
  • RE: [spctools-discuss] Can't open spctools wiki Eric Deutsch
  • Re: [spctools-discuss] Can't open spctools wiki xu
  • [spctools-discuss] Re: Can't open spctools wiki Jamie Walters
  • RE: [spctools-discuss] Re: Can't open spctools wiki Eric Deutsch
• [spctools-discuss] can't open SPC tools wiki xu
• [spctools-discuss] Advanced TPP course July 19-21 Eric Deutsch
• Re: [spctools-discuss] Comet can not perform search Jimmy Eng
  • Re: [spctools-discuss] Comet can not perform search 钟传奇
• [spctools-discuss] idconvert error Emma Whittington
• [spctools-discuss] ProteinProphet Error (TPP 5.0.0) Marc Isaksson
• [spctools-discuss] libra calculation richard chiang
  • [spctools-discuss] libra calculation richard chiang
• [spctools-discuss] TPP 5.0.0 compile error on comet.exe build: /usr/bin/ld: cannot find -lpthread Joe
  • Re: [spctools-discuss] TPP 5.0.0 compile error on comet.exe build: /usr/bin/ld: cannot find -lpthread Jimmy Eng
  • Re: [spctools-discuss] TPP 5.0.0 compile error on comet.exe build: /usr/bin/ld: cannot find -lpthread J
• [spctools-discuss] Re: Beginner Problem - Data Conversion from .D to .mzXML Yuqi Shi
• [spctools-discuss] Problem when using trapper to convert agilent.d into .mzXML file Yuqi Shi
  • Re: [spctools-discuss] Problem when using trapper to convert agilent.d into .mzXML file Luis Mendoza
• [spctools-discuss] Parameters in X!tandem inputfile for itraq 8 richard chiang
  • RE: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8 Eric Deutsch
  • Re: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8 richard chiang
  • RE: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8 Eric Deutsch
  • Re: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8 richard chiang
  • Re: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8 richard chiang
• [spctools-discuss] Extended TMT multiplexing Phil
  • [spctools-discuss] Re: Extended TMT multiplexing Phil
• [spctools-discuss] Automatic spectral library download not working? sfghuis
  • Re: [spctools-discuss] Automatic spectral library download not working? Luis Mendoza
  • Re: [spctools-discuss] Automatic spectral library download not working? sfghuis
  • Re: [spctools-discuss] Automatic spectral library download not working? Luis Mendoza
• [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? Chih-Chiang Tsou
  • Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? David Shteynberg
  • Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? Chih-Chiang Tsou
  • Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? David Shteynberg
  • Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? Chih-Chiang Tsou
  • Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? David Shteynberg
  • Re: [spctools-discuss] Can PeptideProphet take beyond top hit for probability calculation? Chih-Chiang Tsou
• [spctools-discuss] Comet search of data on D:\ [Windows 10] error Joey Davis
  • Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Luis Mendoza
  • Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Joey Davis
  • Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Luis Mendoza
  • Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Joey Davis
  • Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Luis Mendoza
  • Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Jimmy Eng
  • Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Joey Davis
• [spctools-discuss] TPP Peptide prophet – XInteract, error when using the .comet.pep.xml file but not with the corresponding .tandem file Murielle Ålund
  • Re: [spctools-discuss] TPP Peptide prophet – XInteract, error when using the .comet.pep.xml file but not with the corresponding .tandem file Luis Mendoza
• [spctools-discuss] Export to Spreadsheet function doesn't work David Zhao
  • Re: [spctools-discuss] Export to Spreadsheet function doesn't work Luis Mendoza
• [spctools-discuss] Database search of heavy isotope labeled peptides Sim Kae Hwan
  • RE: [spctools-discuss] Database search of heavy isotope labeled peptides Eric Deutsch
• [spctools-discuss] URL /tpp/cgi-bin/tpp/cgi-bin/tpp_gui.pl was not found Robert
  • Re: [spctools-discuss] URL /tpp/cgi-bin/tpp/cgi-bin/tpp_gui.pl was not found Luis Mendoza
• [spctools-discuss] How does RT model in PeptideProphet work? Ali
• [spctools-discuss] tandem.exe command line parameters (other than the input.xml file) Mike Rightmire
  • [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file) Mike Rightmire
  • RE: [spctools-discuss] Re: tandem.exe command line parameters (other than the input.xml file) Eric Deutsch

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