Hello all, I created a decoy protein database using 'Database Maker tool' in Compass software (developed by Joshua Coon et.al). The decoy version of each protein has >decoy in it's fasta name in order to distinguish it from the target protein. d appended it to the target database. I appended the decoy database to the target database to create a concatenated target+decoy protein database. I want to search my MzXML data files (and Libra quantitation) against the concatenated database using TPP pipeline in Labkey. How do I change the MS2 search protocol so that the target-decoy protein database is searched properly.
Any help or suggestions are appreciated! Thank you Arti -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
