spctools-discuss  

Messages by Date

• 2017/11/17 Re: [spctools-discuss] Analyze peptides- error David Shteynberg
• 2017/11/17 Re: [spctools-discuss] Analyze peptides- error Elkan Dong
• 2017/11/16 [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Alejandro
• 2017/11/16 Re: [spctools-discuss] Problem with Ubiquitination tag on spectrast Marine
• 2017/11/14 Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
• 2017/11/10 Re: [spctools-discuss] Running StPeter on peptides labeled with TMT (as fixed mod in Comet) Error in Quant Adam R
• 2017/11/10 Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Luis Mendoza
• 2017/11/10 Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
• 2017/11/10 Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Luis Mendoza
• 2017/11/10 Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
• 2017/11/10 Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Luis Mendoza
• 2017/11/10 Re: [spctools-discuss] Running StPeter on peptides labeled with TMT (as fixed mod in Comet) Error in Quant Luis Mendoza
• 2017/11/10 Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
• 2017/11/10 Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Luis Mendoza
• 2017/11/10 Re: [spctools-discuss] Running StPeter on peptides labeled with TMT (as fixed mod in Comet) Error in Quant Adam R
• 2017/11/10 Re: [spctools-discuss] Running StPeter on peptides labeled with TMT (as fixed mod in Comet) Error in Quant Luis Mendoza
• 2017/11/10 [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
• 2017/11/10 Re: [spctools-discuss] Problem with Ubiquitination tag on spectrast David Shteynberg
• 2017/11/10 [spctools-discuss] Problem with Ubiquitination tag on spectrast Marine
• 2017/11/09 [spctools-discuss] Running StPeter on peptides labeled with TMT (as fixed mod in Comet) Error in Quant Adam R
• 2017/11/09 Re: [spctools-discuss] running a pepXML output from Myrimatch to parse through peptide-PROPHET Chambers, Matthew
• 2017/11/08 Re: [spctools-discuss] Documentation for Linux version of TPP? Luis Mendoza
• 2017/11/08 Re: [spctools-discuss] Update paths command failure Luis Mendoza
• 2017/11/08 Re: [spctools-discuss] running a pepXML output from Myrimatch to parse through peptide-PROPHET Luis Mendoza
• 2017/11/08 Re: [spctools-discuss] x tandem search Command FAILED RETURN CODE:65280 Luis Mendoza
• 2017/11/08 Re: [spctools-discuss] Re: TPP v5.1.0 Installation Windows Server 2012 Luis Mendoza
• 2017/11/08 [spctools-discuss] Re: TPP v5.1.0 Installation Windows Server 2012 Adam R
• 2017/11/08 [spctools-discuss] TPP v5.1.0 Installation Windows Server 2012 Adam R
• 2017/11/06 [spctools-discuss] Documentation for Linux version of TPP? Owen Leiser
• 2017/11/06 [spctools-discuss] Update paths command failure michaela . filiou
• 2017/11/03 [spctools-discuss] TPP 5.1.0 Release is now available Luis Mendoza
• 2017/10/31 [spctools-discuss] Running the full TPP Pipeline (MINPROB option for ProteinProphet) Adam R
• 2017/10/30 Re: [spctools-discuss] PTM Prophet Command Failure David Shteynberg
• 2017/10/30 Re: [spctools-discuss] PTM Prophet Command Failure Adam R
• 2017/10/30 Re: [spctools-discuss] Analyzing filtered peptideprophet results in proteinprophet... Adam R
• 2017/10/29 Re: [spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool David Shteynberg
• 2017/10/28 Re: [spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool Adam R
• 2017/10/27 RE: [spctools-discuss] spectrast produces empty output file Eric Deutsch
• 2017/10/27 Re: [spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool David Shteynberg
• 2017/10/25 RE: [spctools-discuss] Peptide identification using AB SCIEX Raw data Naiping Dong
• 2017/10/25 RE: [spctools-discuss] Peptide identification using AB SCIEX Raw data Eric Deutsch
• 2017/10/25 RE: [spctools-discuss] Peptide identification using AB SCIEX Raw data Naiping Dong
• 2017/10/25 RE: [spctools-discuss] Peptide identification using AB SCIEX Raw data Eric Deutsch
• 2017/10/24 [spctools-discuss] Peptide identification using AB SCIEX Raw data Elkan Dong
• 2017/10/24 Re: [spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool David Shteynberg
• 2017/10/24 [spctools-discuss] x tandem search Command FAILED RETURN CODE:65280 ana G-A
• 2017/10/24 Re: [spctools-discuss] iProphet command failure (file not found: not created or deleted?) with interact.pep.xml file from MSFragger result David Shteynberg
• 2017/10/24 Re: [spctools-discuss] spectrast produces empty output file Hannes Roest
• 2017/10/23 Re: [spctools-discuss] iProphet command failure (file not found: not created or deleted?) with interact.pep.xml file from MSFragger result Adam R
• 2017/10/23 Re: [spctools-discuss] iProphet command failure (file not found: not created or deleted?) with interact.pep.xml file from MSFragger result Adam R
• 2017/10/23 Re: [spctools-discuss] iProphet command failure (file not found: not created or deleted?) with interact.pep.xml file from MSFragger result David Shteynberg
• 2017/10/23 Re: [spctools-discuss] iProphet command failure (file not found: not created or deleted?) with interact.pep.xml file from MSFragger result David Shteynberg
• 2017/10/23 [spctools-discuss] iProphet command failure (file not found: not created or deleted?) with interact.pep.xml file from MSFragger result Adam R
• 2017/10/20 Re: [spctools-discuss] spectrast produces empty output file Hannes Röst
• 2017/10/20 RE: [spctools-discuss] spectrast produces empty output file Eric Deutsch
• 2017/10/20 Re: [spctools-discuss] spectrast produces empty output file Hannes Roest
• 2017/10/19 [spctools-discuss] spectrast2tsv.py from Aebersold 2015 doesn't generate an output .csv or most of the programmed print messages Steven Shuken
• 2017/10/19 [spctools-discuss] Re: "ImportError: No module named msproteomicstoolslib.data_structures.aminoacides" When running spectrast2tsv.py Steven Shuken
• 2017/10/19 [spctools-discuss] Re: splib to mz(x)ml format 'Peter Cimermancic' via spctools-discuss
• 2017/10/19 [spctools-discuss] Re: "ImportError: No module named msproteomicstoolslib.data_structures.aminoacides" When running spectrast2tsv.py Hannes Roest
• 2017/10/19 [spctools-discuss] Re: splib to mz(x)ml format Hannes Roest
• 2017/10/19 [spctools-discuss] generating spectral library excluding the negative PSMs from database search Mrwhy2kill
• 2017/10/19 Re: [spctools-discuss] Open heatmap (html) generated with compare proteins tool Ulrich auf dem Keller
• 2017/10/18 [spctools-discuss] "ImportError: No module named msproteomicstoolslib.data_structures.aminoacides" When running spectrast2tsv.py Steven Shuken
• 2017/10/18 [spctools-discuss] splib to mz(x)ml format 'Peter Cimermancic' via spctools-discuss
• 2017/10/18 Re: [spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool David Shteynberg
• 2017/10/18 [spctools-discuss] Re: Open heatmap (html) generated with compare proteins tool Adam R
• 2017/10/17 Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Steven Shuken
• 2017/10/17 Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Steven Shuken
• 2017/10/17 Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Steven Shuken
• 2017/10/17 Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Steven Shuken
• 2017/10/17 Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Jimmy Eng
• 2017/10/17 Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP David Shteynberg
• 2017/10/17 Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Steven Shuken
• 2017/10/16 Re: [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Jimmy Eng
• 2017/10/16 [spctools-discuss] Error searching Aebersold lab's files with X!Tandem on TPP Steven Shuken
• 2017/10/16 Re: [spctools-discuss] Protxml viewing error (not legacy) Server error 500 Bareword "endform" not allowed while "strict subs" in use Steven Shuken
• 2017/10/16 Re: [spctools-discuss] Open heatmap (html) generated with compare proteins tool David Shteynberg
• 2017/10/16 [spctools-discuss] Open heatmap (html) generated with compare proteins tool Alexis Varin
• 2017/10/16 [spctools-discuss] Opening heatmap (html) generated with compare proteins tool Alexis Varin
• 2017/10/05 Re: [spctools-discuss] PTM Prophet Command Failure Adam R
• 2017/10/02 Re: [spctools-discuss] PTM Prophet Command Failure David Shteynberg
• 2017/09/29 Re: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database Adam R
• 2017/09/29 Re: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database Jimmy Eng
• 2017/09/29 Re: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database Adam R
• 2017/09/29 Re: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database Frédéric DELOLME
• 2017/09/29 RE: [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database Eric Deutsch
• 2017/09/29 [spctools-discuss] "- Search progress: Error - database file, expecting definition line here." Error with custom database Adam R
• 2017/09/28 Re: [spctools-discuss] PTM Prophet Command Failure Adam R
• 2017/09/26 Re: [spctools-discuss] PTM Prophet Command Failure Adam R
• 2017/09/26 Re: [spctools-discuss] PTM Prophet Command Failure David Shteynberg
• 2017/09/26 Re: [spctools-discuss] PTM Prophet Command Failure Adam R
• 2017/09/26 Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0) Jimmy Eng
• 2017/09/26 Re: [spctools-discuss] PTM Prophet Command Failure David Shteynberg
• 2017/09/26 Re: [spctools-discuss] PTM Prophet Command Failure Adam R
• 2017/09/25 [spctools-discuss] StPeter Command Failure TPP v.5.0.1 Adam R
• 2017/09/25 Re: [spctools-discuss] PTM Prophet Command Failure David Shteynberg
• 2017/09/24 [spctools-discuss] PTM Prophet Command Failure wicher89
• 2017/09/22 Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0) David Shteynberg
• 2017/09/22 Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0) Jimmy Eng
• 2017/09/22 Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0) Alejandro
• 2017/09/06 Re: [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0) Jimmy Eng
• 2017/09/06 [spctools-discuss] Re: Spectral library generation_consensus library split Fabia Simona
• 2017/09/05 [spctools-discuss] How many proteins to be reported after database searching? lwhbackup
• 2017/09/05 [spctools-discuss] Spectral library generation_consensus library split Fabia Simona
• 2017/09/05 [spctools-discuss] SpectraST Consensus library unsplit vs. split Fabia Simona
• 2017/08/31 [spctools-discuss] Dimethylation quantification with XPRESS (TPP 5.0) Oded
• 2017/08/20 [spctools-discuss] Tandem search engine is getting time out after every single run. Syed Azmal Ali
• 2017/08/11 Re: [spctools-discuss] TPP Search Software not working with generated mzML files Connor Hoffmann
• 2017/08/10 Re: [spctools-discuss] Re: TPP v5.0 in Windows 7 not generating images in Xpress nor ASAP report and protxml legacy viewer not working Alejandro
• 2017/08/08 Re: [spctools-discuss] Re: TPP v5.0 in Windows 7 not generating images in Xpress nor ASAP report and protxml legacy viewer not working Jimmy Eng
• 2017/08/08 [spctools-discuss] Re: TPP v5.0 in Windows 7 not generating images in Xpress nor ASAP report and protxml legacy viewer not working Jimmy Eng
• 2017/08/08 Re: [spctools-discuss] TPP Search Software not working with generated mzML files Connor Hoffmann
• 2017/08/07 RE: [spctools-discuss] TPP Search Software not working with generated mzML files Michael Hoopmann
• 2017/08/06 [spctools-discuss] Error convert The GPM Human library (.hlf) to splib Shadab Ahmad
• 2017/08/02 [spctools-discuss] TPP v5.0 in Windows 7 not generating images in Xpress nor ASAP report and protxml legacy viewer not working Alejandro
• 2017/08/01 [spctools-discuss] Re: Proteome Discoverer 2.0 exported pep.xml does not work with PeptideProphet Le Picard Marine
• 2017/07/20 [spctools-discuss] How to include the iRT in the Library building mode SpecraST Carolina
• 2017/07/13 Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 David Shteynberg
• 2017/07/13 Re: [spctools-discuss] Re: StPeter documentation Hampton, Brian
• 2017/07/12 Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 David Shteynberg
• 2017/07/12 Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 Jason Winget
• 2017/07/12 Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 David Shteynberg
• 2017/07/12 Re: [spctools-discuss] PTMProphet Problems in TPP 5.0.0 Jason Winget
• 2017/07/12 [spctools-discuss] Re: StPeter documentation Jason Winget
• 2017/06/28 Re: [spctools-discuss] PTMProphet -- command line David Shteynberg
• 2017/06/28 [spctools-discuss] PTMProphet -- command line Victoria Lee
• 2017/06/26 [spctools-discuss] Upcoming TPP courses Eric Deutsch
• 2017/06/26 RE: [spctools-discuss] SpectraST question about different charge states of candidate library spectra and query spectra Eric Deutsch
• 2017/06/26 [spctools-discuss] win10：403 forbidden You don't have permission to access /tpp on this server. ymstep2016
• 2017/06/26 [spctools-discuss] Re: Peptide Prophet issues...help! David Lauenstein
• 2017/06/25 [spctools-discuss] SpectraST question about different charge states of candidate library spectra and query spectra Jianqiao Shen
• 2017/06/20 [spctools-discuss] Installing TPP on Fedora 25. Failure to build libspareparts.a. Govind Chandra
• 2017/06/19 Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
• 2017/06/19 Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
• 2017/06/19 Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys David Shteynberg
• 2017/06/19 Re: [spctools-discuss] Analyze peptides- error David Shteynberg
• 2017/06/19 [spctools-discuss] Analyze peptides- error Ada A
• 2017/06/19 Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
• 2017/06/17 Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys David Shteynberg
• 2017/06/17 Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
• 2017/06/16 Re: [spctools-discuss] TPP 5.0 compilation on CentOS fails Luis Mendoza
• 2017/06/16 Re: [spctools-discuss] TMT 8-plex Libra Condition File Parameters Luis Mendoza
• 2017/06/16 [spctools-discuss] StPeter documentation Brian Hampton
• 2017/06/16 [spctools-discuss] TMT 8-plex Libra Condition File Parameters Linh Nguyen
• 2017/06/15 Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys David Shteynberg
• 2017/06/14 Re: [spctools-discuss] TPP 5.0 compilation on CentOS fails Jimmy Eng
• 2017/06/14 [spctools-discuss] for rhel based OSes (and tpp devel) - include glibc-static rpm as prerequisite to avoid: "cannot find -lpthread" & similar lejeczek
• 2017/06/13 [spctools-discuss] TPP 5.0 compilation on CentOS fails Tomas
• 2017/06/13 Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys David Shteynberg
• 2017/06/13 Re: [spctools-discuss] comet component compliation fails Jimmy Eng
• 2017/06/13 Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
• 2017/06/13 Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
• 2017/06/13 [spctools-discuss] release_5-0-0 build - archive_read_support_filter_lzop.c:434: undefined reference to `lzo1x_decompress_safe lejeczek
• 2017/06/13 [spctools-discuss] TPP release_5-0-0 compilation (boost) quirk lejeczek
• 2017/06/13 [spctools-discuss] comet component compliation fails lejeczek
• 2017/06/13 Re: [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys David Shteynberg
• 2017/06/12 [spctools-discuss] negative probabilities in peptide prophet with results from SpectraST search with library with decoys Carolina
• 2017/06/02 [spctools-discuss] TPP @ ASMS -- booth #127 + Tuesday Workshop Luis Mendoza
• 2017/05/24 RE: [spctools-discuss] Re: Can't open spctools wiki Eric Deutsch
• 2017/05/24 [spctools-discuss] Re: Can't open spctools wiki Jamie Walters
• 2017/05/24 [spctools-discuss] Re: iProphet process Yaarub Musa
• 2017/05/23 Re: [spctools-discuss] Re: iProphet process David Shteynberg
• 2017/05/23 [spctools-discuss] Re: iProphet process Yaarub Musa
• 2017/05/22 Re: [spctools-discuss] Peptide Prophet issues...help! Luis Mendoza
• 2017/05/22 [spctools-discuss] Peptide Prophet issues...help! Aeon K
• 2017/05/22 Re: [spctools-discuss] Unable to kill command 6416! () Yaarub Musa
• 2017/05/22 Re: [spctools-discuss] iProphet process David Shteynberg
• 2017/05/22 [spctools-discuss] iProphet process Yaarub Musa
• 2017/05/17 Re: [spctools-discuss] Unable to kill command 6416! () Luis Mendoza
• 2017/05/17 [spctools-discuss] Unable to kill command 6416! () Yaarub Musa
• 2017/05/14 Re: [spctools-discuss] Can't open spctools wiki xu
• 2017/05/10 RE: [spctools-discuss] Can't open spctools wiki Eric Deutsch
• 2017/05/10 [spctools-discuss] Can't open spctools wiki xu
• 2017/05/10 [spctools-discuss] can't open SPC tools wiki xu
• 2017/05/10 [spctools-discuss] Advanced TPP course July 19-21 Eric Deutsch
• 2017/05/05 Re: [spctools-discuss] Comet can not perform search 钟传奇
• 2017/05/05 Re: [spctools-discuss] Comet can not perform search Jimmy Eng
• 2017/05/05 [spctools-discuss] Re: Extended TMT multiplexing Phil
• 2017/05/03 [spctools-discuss] idconvert error Emma Whittington
• 2017/05/02 [spctools-discuss] ProteinProphet Error (TPP 5.0.0) Marc Isaksson
• 2017/04/30 [spctools-discuss] libra calculation richard chiang
• 2017/04/30 [spctools-discuss] libra calculation richard chiang
• 2017/04/26 Re: [spctools-discuss] TPP 5.0.0 compile error on comet.exe build: /usr/bin/ld: cannot find -lpthread J
• 2017/04/25 Re: [spctools-discuss] TPP 5.0.0 compile error on comet.exe build: /usr/bin/ld: cannot find -lpthread Jimmy Eng
• 2017/04/25 [spctools-discuss] TPP 5.0.0 compile error on comet.exe build: /usr/bin/ld: cannot find -lpthread Joe
• 2017/04/21 Re: [spctools-discuss] Problem when using trapper to convert agilent.d into .mzXML file Luis Mendoza
• 2017/04/21 [spctools-discuss] Re: Beginner Problem - Data Conversion from .D to .mzXML Yuqi Shi
• 2017/04/21 [spctools-discuss] Problem when using trapper to convert agilent.d into .mzXML file Yuqi Shi
• 2017/04/14 Re: [spctools-discuss] Automatic spectral library download not working? Luis Mendoza
• 2017/04/14 Re: [spctools-discuss] Spectra assignment in libra/peptideprophet Veit Schwaemmle
• 2017/04/13 Re: [spctools-discuss] Spectra assignment in libra/peptideprophet Luis Mendoza
• 2017/04/13 Re: [spctools-discuss] TPP 4.8.0 installation issues on Ubuntu 14.04 sfghuis
• 2017/04/07 Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Joey Davis
• 2017/04/07 Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Jimmy Eng
• 2017/04/07 Re: [spctools-discuss] Comet search of data on D:\ [Windows 10] error Luis Mendoza
• 2017/04/07 Re: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8 richard chiang
• 2017/04/07 Re: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8 richard chiang
• 2017/04/07 Re: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8 richard chiang
• 2017/04/06 RE: [spctools-discuss] Parameters in X!tandem inputfile for itraq 8 Eric Deutsch

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