Ciao Silvia,
It seems that the name of your folder (directory) contains spaces and
parenthesis: "New Folder (5)".  Please avoid using those types of
characters in filenames and paths, as it will confuse the TPP (and even
though they are valid in Windows).  Stick to using letters, numbers,
dashes, and the underscore for such names.

As for the mzXML file that is created by T2D: are you able to open and
visualize it with Pep3D?

Hope this helps!
--Luis


On Tue, Nov 8, 2011 at 8:02 AM, Silvia Matteoni
<[email protected]>wrote:

> Hi to everybody,
>
> I tried to solve my problem but now as we say in Rome: ' I grope in
> the dark " and I need help!!
> I installed the TPP v4.4 (vuvuzela) Rev. 1. Since I have a MALDI
> toftof (Applied Biosystem), my raw data are T2D.
> I used the Peack list conversion tool
> (http://www.proteomecommons.org/current/531/ConvertPeakList.jnlp ) to
> convert these files to mzXML.
> I can upload files on the TPP for tandem analysis but after analysis
> the program tells me that command FAILED because files are unreadable.
> I'am attaching some converted files, can you help me?
>
> thank you very much,
> best
> Silvia
>
>  <http://www.sienabiotech.it/>
>
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