Sounds like you are missing the parameter file SSRCalc3 needs to be able to
compute theoretical RTs for the peptides.  Can  you search you computer for
this file? It should be called c:\Inetpub\tpp-bin\SSRCalc3.par.  The file
can be downloaded directly from here:
http://sashimi.svn.sourceforge.net/viewvc/sashimi/trunk/trans_proteomic_pipeline/perl/SSRCalc3.par?view=log

Alternativelly, you can try to reinstall the TPP.

-Davi
On Nov 10, 2011 7:56 AM, "Manayi" <[email protected]> wrote:

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