Corretion: We called it as follows: R:\programs\windows_programs\msconvert\msconvert.exe --outfile ngJ7- Fr1_3.mzXML --filter "msLevel 2-" --mzXML --64 --mz64 --inten32 M:/ JHU_NHLBI_MS_FILES/Melanies_iTRAQ_data/wiff_files/Fraction1/ Fr1_3.wiff
That is, we used the --outfile option. On Jan 20, 1:12 pm, Gautam Saxena <[email protected]> wrote: > When running msconvert (latest stable release: 2.2.3214 , which we > downloaded today) on a wiff file, we got the following error: > > Error writing run 1 in Fr1_3.wiff: > [ExperimentImpl::getBPC] Index was outside the bounds of the array. > > (We did not get this error on 40 other wiff files.) The way in which > we called this msconvert was as follows: > > R:\programs\windows_programs\msconvert\msconvert.exe --filter "msLevel > 2-" --mzXML --64 --mz64 --inten32 M:/XXXXX/iTRAQ_data/wiff_files/ > Fraction1/Fr1_3.wiff > > Any clues? > > What's strange, as well, though is that we think (though we're not > 100% sure) that msconvert still retunred a "success" code -- as in, > the msconvert program returned a code of 0, implying that it > succeeded, when it clearly did not. (The mzXML file never got > created.) > > More details: > > ProteoWizard release: 2.2.3214 (2012-1-13) > ProteoWizard MSData: 2.2.3214 (2012-1-13) > ProteoWizard Analysis: 2.2.3214 (2012-1-13) > Build date: Jan 17 2012 15:54:29 > > -Gautam -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
