spctools-discuss  

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• • Re: [spctools-discuss] Duplicate peptides in consensus spectral library with different protein identifications Sami Pietilä
• [spctools-discuss] No prot-MODELS Heeyoun Hwang
  • [spctools-discuss] Re: No prot-MODELS Heeyoun Hwang
  • Re: [spctools-discuss] Re: No prot-MODELS Luis Mendoza
  • Re: [spctools-discuss] Re: No prot-MODELS Heeyoun Hwang
  • Re: [spctools-discuss] Re: No prot-MODELS Luis Mendoza
  • Re: [spctools-discuss] Re: No prot-MODELS pbell . science
  • Re: [spctools-discuss] Re: No prot-MODELS pbell . science
• [spctools-discuss] Export mzIndentML not recognizing file Alexander Pelletier
  • [spctools-discuss] Re: Export mzIndentML not recognizing file Heeyoun Hwang
  • [spctools-discuss] Re: Export mzIndentML not recognizing file Alexander Pelletier
• [spctools-discuss] Mascot automatic decoy xinteract Dr. Andreas Otto
• [spctools-discuss] XPRESS fails with big iProphet analyzed files TPP 5.1, Windows 7 Alejandro
  • Re: [spctools-discuss] XPRESS fails with big iProphet analyzed files TPP 5.1, Windows 7 David Shteynberg
  • Re: [spctools-discuss] XPRESS fails with big iProphet analyzed files TPP 5.1, Windows 7 Alejandro
• [spctools-discuss] Stpeter comet vs Xtandem? Volkix
  • [spctools-discuss] Stpeter comet vs Xtandem? Jason Winget
  • [spctools-discuss] Re: Stpeter comet vs Xtandem? Panos Ioannidis
  • [spctools-discuss] Re: Stpeter comet vs Xtandem? Jason Winget
  • [spctools-discuss] Re: Stpeter comet vs Xtandem? Panos Ioannidis
  • RE: [spctools-discuss] Re: Stpeter comet vs Xtandem? Eric Deutsch
  • RE: [spctools-discuss] Re: Stpeter comet vs Xtandem? Eric Deutsch
• [spctools-discuss] TPP for large databases/ metaproteomics Dr. Andreas Otto
  • [spctools-discuss] TPP for large databases/ metaproteomics Andreas Otto
• [spctools-discuss] Index mzXML file error Pavel
  • Re: [spctools-discuss] Index mzXML file error Luis Mendoza
  • Re: [spctools-discuss] Index mzXML file error Pavel
• [spctools-discuss] Exporting Proteome Discoverer 2.2 results to TPP Joseph Gillen
  • [spctools-discuss] Re: Exporting Proteome Discoverer 2.2 results to TPP Alejandro
  • Re: [spctools-discuss] Exporting Proteome Discoverer 2.2 results to TPP David Shteynberg
• [spctools-discuss] SpectraST OpenModTierSearch invalid pointer crash wout
• [spctools-discuss] SpectraST: Can't process NIST .msp file wout
  • [spctools-discuss] Re: SpectraST: Can't process NIST .msp file Henry Lam
  • [spctools-discuss] Re: SpectraST: Can't process NIST .msp file wout
  • [spctools-discuss] Re: SpectraST: Can't process NIST .msp file Henry Lam
• [spctools-discuss] Interact parser multithreading Volkix
  • Re: [spctools-discuss] Interact parser multithreading David Shteynberg
  • Re: [spctools-discuss] Interact parser multithreading Volkix
  • Re: [spctools-discuss] Interact parser multithreading David Shteynberg
  • Re: [spctools-discuss] Interact parser multithreading Volkix
• [spctools-discuss] TPP: Comet search output for decoys does not look correct (for .pep.xml and .pin files) Francesca Barry
  • Re: [spctools-discuss] TPP: Comet search output for decoys does not look correct (for .pep.xml and .pin files) Jimmy Eng
  • Re: [spctools-discuss] TPP: Comet search output for decoys does not look correct (for .pep.xml and .pin files) Francesca Barry
• [spctools-discuss] Tandem error: Rerunning the iTRAQ fractions are giving repeted same error at the end of the completion in tandem Syed Azmal Ali
• [spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error Monica HPC
  • RE: [spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error Michael Hoopmann
  • Re: [spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error Monica HPC
  • Re: [spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error Joshua Dunham
• [spctools-discuss] TPP build issues on an Ubuntu 17 system kumar
  • RE: [spctools-discuss] TPP build issues on an Ubuntu 17 system Eric Deutsch
  • Re: [spctools-discuss] TPP build issues on an Ubuntu 17 system kumar
  • RE: [spctools-discuss] TPP build issues on an Ubuntu 17 system Eric Deutsch
• [spctools-discuss] X!tandem stops after a few searches Volkix
  • Re: [spctools-discuss] X!tandem stops after a few searches Luis Mendoza
  • Re: [spctools-discuss] X!tandem stops after a few searches Volkix
  • Re: [spctools-discuss] X!tandem stops after a few searches Luis Mendoza
  • Re: [spctools-discuss] X!tandem stops after a few searches Volkix
  • Re: [spctools-discuss] X!tandem stops after a few searches Volkix
  • Re: [spctools-discuss] X!tandem stops after a few searches Luis Mendoza
• [spctools-discuss] LDAP Authentication Thomas Mohr
• [spctools-discuss] Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Stanislav Luban
  • RE: [spctools-discuss] Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Eric Deutsch
  • [spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Stanislav Luban
  • [spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Stanislav Luban
  • RE: [spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Eric Deutsch
  • [spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Stanislav Luban
  • RE: [spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Eric Deutsch
  • [spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. Stanislav Luban
• [spctools-discuss] SpectraST? kmorgenstern5
• [spctools-discuss] SpectraST Questions kmorgenstern5
• [spctools-discuss] Re: Problem with xinteract/peptide prophet Vipul Batra
  • Re: [spctools-discuss] Re: Problem with xinteract/peptide prophet Luis Mendoza
  • Re: [spctools-discuss] Re: Problem with xinteract/peptide prophet Vipul Batra
  • Re: [spctools-discuss] Re: Problem with xinteract/peptide prophet Luis Mendoza
  • Re: [spctools-discuss] Re: Problem with xinteract/peptide prophet Vipul Batra
• [spctools-discuss] PeptideProphet - Using other search program outputs (Byonic) M McDermott
  • Re: [spctools-discuss] PeptideProphet - Using other search program outputs (Byonic) David Shteynberg
• [spctools-discuss] Software documentation issue Paul Abraham
  • [spctools-discuss] Re: Software documentation issue Paul Abraham
• [spctools-discuss] TPP documentation issue Paul Abraham
  • Re: [spctools-discuss] TPP documentation issue Hampton, Brian
  • Re: [spctools-discuss] TPP documentation issue David Shteynberg
  • Re: [spctools-discuss] TPP documentation issue Paul Abraham
  • Re: [spctools-discuss] TPP documentation issue David Shteynberg
  • Re: [spctools-discuss] TPP documentation issue Zack Potter
  • Re: [spctools-discuss] TPP documentation issue David Shteynberg
• [spctools-discuss] Selenocysteine in Kojak Mariya Indeykina
  • RE: [spctools-discuss] Selenocysteine in Kojak Michael Hoopmann
  • RE: [spctools-discuss] Selenocysteine in Kojak Maria Indeykina
  • RE: [spctools-discuss] Selenocysteine in Kojak Michael Hoopmann
• [spctools-discuss] TPP 5.1.0 md qudratullah
  • Re: [spctools-discuss] TPP 5.1.0 David Shteynberg
• [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML Thibault Robin
  • Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML David Shteynberg
• [spctools-discuss] TPP_5.1.0 installation md qudratullah
• [spctools-discuss] How to use PeptideProphet with a pepxml file as its input argument? Mohammad Taheri
  • Re: [spctools-discuss] How to use PeptideProphet with a pepxml file as its input argument? Luis Mendoza
• [spctools-discuss] How to use PeptideProphet with a pep.xml file as its input argument? Mohammad Taheri
• [spctools-discuss] TPP_5.1.0 md qudratullah
  • Re: [spctools-discuss] TPP_5.1.0 Luis Mendoza
• [spctools-discuss] TPP 5.X removed NOPLOT, but xinteract appears to not have been updated for the change jony
  • Re: [spctools-discuss] TPP 5.X removed NOPLOT, but xinteract appears to not have been updated for the change Luis Mendoza
  • Re: [spctools-discuss] TPP 5.X removed NOPLOT, but xinteract appears to not have been updated for the change jony
  • Re: [spctools-discuss] TPP 5.X removed NOPLOT, but xinteract appears to not have been updated for the change Luis Mendoza
• [spctools-discuss] Problem with peptide quantitation with ASAPRatio Li Ning
• [spctools-discuss] make with simultaneous jobs - does it work? lejeczek
• [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... lejeczek
  • Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... David Shteynberg
  • Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... Peter Sudmant
  • Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... David Shteynberg
  • Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... Peter Sudmant
  • Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... David Shteynberg
  • Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... David Shteynberg
  • Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... Felipe da Veiga Leprevost
  • Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... David Shteynberg
  • Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... Felipe da Veiga Leprevost
  • Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... David Shteynberg
  • Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:.... Felipe da Veiga Leprevost
• [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Alejandro
  • Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Luis Mendoza
  • Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Alejandro
  • Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Luis Mendoza
  • Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Alejandro
  • Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Luis Mendoza
  • Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Alejandro
  • Re: [spctools-discuss] Use of XPRESS intensities in Peptide/ProteinProphet and XPRESS settings for high-res MS TPP 5.1 Luis Mendoza
• [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
  • Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Luis Mendoza
  • Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
  • Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Luis Mendoza
  • Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
  • Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Luis Mendoza
  • Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
  • Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Luis Mendoza
  • Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
  • Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Luis Mendoza
  • Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
  • Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Luis Mendoza
  • Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam R
  • Re: [spctools-discuss] TMT Quant with Libra (Ignore/rescue zero values i.e. large ratios & select/de-select quantified peptides) Adam Rabalski
• [spctools-discuss] Problem with Ubiquitination tag on spectrast Marine
  • Re: [spctools-discuss] Problem with Ubiquitination tag on spectrast David Shteynberg
  • Re: [spctools-discuss] Problem with Ubiquitination tag on spectrast Marine
  • Re: [spctools-discuss] Problem with Ubiquitination tag on spectrast Luis Mendoza
  • Re: [spctools-discuss] Problem with Ubiquitination tag on spectrast Marine
• [spctools-discuss] Running StPeter on peptides labeled with TMT (as fixed mod in Comet) Error in Quant Adam R
  • Re: [spctools-discuss] Running StPeter on peptides labeled with TMT (as fixed mod in Comet) Error in Quant Luis Mendoza
  • Re: [spctools-discuss] Running StPeter on peptides labeled with TMT (as fixed mod in Comet) Error in Quant Adam R
  • Re: [spctools-discuss] Running StPeter on peptides labeled with TMT (as fixed mod in Comet) Error in Quant Luis Mendoza
  • Re: [spctools-discuss] Running StPeter on peptides labeled with TMT (as fixed mod in Comet) Error in Quant Adam R
• Re: [spctools-discuss] running a pepXML output from Myrimatch to parse through peptide-PROPHET Luis Mendoza
  • Re: [spctools-discuss] running a pepXML output from Myrimatch to parse through peptide-PROPHET Chambers, Matthew
• [spctools-discuss] TPP v5.1.0 Installation Windows Server 2012 Adam R
  • [spctools-discuss] Re: TPP v5.1.0 Installation Windows Server 2012 Adam R
  • Re: [spctools-discuss] Re: TPP v5.1.0 Installation Windows Server 2012 Luis Mendoza
• [spctools-discuss] Documentation for Linux version of TPP? Owen Leiser
  • Re: [spctools-discuss] Documentation for Linux version of TPP? Luis Mendoza
• [spctools-discuss] Update paths command failure michaela . filiou
  • Re: [spctools-discuss] Update paths command failure Luis Mendoza
• [spctools-discuss] TPP 5.1.0 Release is now available Luis Mendoza
• [spctools-discuss] Running the full TPP Pipeline (MINPROB option for ProteinProphet) Adam R
• Re: [spctools-discuss] Analyzing filtered peptideprophet results in proteinprophet... Adam R

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