Hi there, We 've been struggling with converting .dat file to pepXML file. Finallly we nailed it down to bad NCBInr fasta files, since we always got teh error message: Fail to get line from sequence database . So we tried to search with a swissprot database. That worked. We tried different version of NCBInr fasta files including 20120121, 20120128, etc. But none of them works. I wonder, Anyone has the same probelm? Know why? Anyway to fix it? Thanks a lot.
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