Go to Utilities\Browse Files or any other command that can browse 
peptideprophet output file .pep.xml, then you can see a link as [PepXML] that 
can view the output file. Click the link and view .pep.xml file in new window. 
On the head line, click "Other Actions", then you will see a botton named 
Export Spreadsheet. Click the botton, an excel file would then generated with 
same name as the .pep.xml file.
 
 
------------------ Original ------------------
From: "Kinfai Au"; 
Date: 2012年2月13日(星期一) 晚上9:11
To: "spctools-discuss"; 
Subject: [spctools-discuss] [peptideprophet] tab-delimited output?

 
I have a small problem for TPP. After peptideprophet, how can I
convert the peptide identification results to a tab-delimited file or
excel file?

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