I am a PhD student, at the Institute of Cell Biology, University of
Bern. I started using TPP to analyse our MS/MS SILAC raw files.

I came a cross a problem when I was doing quantification using
ASAPratio. I get the following warning messages.

WARNING: Found more than one variable mod on 'K'. Please make sure to
specify a heavy mass for this residue.
WARNING: Found more than one variable mod on 'R'. Please make sure to
specify a heavy mass for this residue.

If you could advice me in this regard it would be greatly appreciated.



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