Hello, I am trying to create a spectrast library from a BiblioSpec library in .ms2 format and I'm having trouble reading modified sequences. For example, a sequence with an oxidized methionene is written as ASEQM[+16.0]END. Spectrast appears to just truncate the sequence to ASEQM, even with a spectrast.usermods file. Does anyone know what the expected format is?
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