hi，all，
I have installed TPP_Setup_v4_5_RAPTURE_rev_1 on my computer. I
want to use PeptideProphet and ProteinProphet to analysis Mascot result
(.dat file).
First, I use Mascot2XML to convert the .dat file to .pep.xml file
with the following command "
_c:\Inetpub\tpp-bin\Mascot2XML c:/Inetpub/wwwroot/ISB/data/F001463_AT40_23.dat
-Dc:/Inetpub/wwwroot/ISB/data/TAIR10_pep_20101214.fasta -Etrypsin_ ".
Then, I use Xinteract to process ProteinProphet and ProteinProphet
analysis together with the following command
"_C:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.05 -l7 -O
F001463_AT40_23.pep.xml_ ".
But I get the error as follow:
running: "C:/Inetpub/tpp-bin/ProphetModels.pl -i interact.pep.xml"
Analyzing interact.pep.xml ...
Parsing search results "c:/Inetpub/wwwroot/ISB/data/F001463_AT40_23 (MASCOT)"...
=> Total of 2094 hits.
=> Total of 0 decoy hits.
=> Total of 0 excluded hits.
command completed in 2 sec
running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I
c:/Inetpub/wwwroot/ISB/data/interact.pep.xml"
c:/Inetpub/wwwroot/ISB/data/interact.pep.xml(823) : error 4: Syntax error
parsing XML.not well-formed (invalid token)at l:823, c:41
This application has requested the Runtime to terminate it in an unusual way.
Please contact the application's support team for more information.
command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I
c:/Inetpub/wwwroot/ISB/data/interact.pep.xml" failed: No such process
command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I
c:/Inetpub/wwwroot/ISB/data/interact.pep.xml" exited with non-zero exit code: 3
QUIT - the job is incomplete
command "c:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.05 -l7 -O
F001463_AT40_23.pep.xml" failed: No such process
*CommandFAILED*.
Any ideas where the problem might be?
Thanks in advance.
--
------
LiuQian
Best Wishes！
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