Hi
You can try digestdb.exe (comes with TPP)
Regards,

*Amit Kumar Yadav *
Senior Research Fellow (SRF-CSIR)
IGIB, New Delhi (India)

*MassWiz Web server* <http://masswiz.igib.res.in>
* <http://masswiz.igib.res.in>**MassWiz sourceforge
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On Mon, Jul 30, 2012 at 7:41 PM, zeyu sun <[email protected]> wrote:

> Hi,
> I'm wondering if any one here know how to predict all tryptic peptides
> from the whole E.coli proteome. There are tools like PeptideCutter for
> proteolytic prediction, but it can only cut one protein at each time. Any
> tools around that can take the whole FASTA database and output a list of
> tryptic peptides along with their masses?
> thank you very much!
>
> sunsun
>
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