You may also want to check out DBToolkit: http://code.google.com/p/dbtoolkit.
Regards, Andrew. On Monday, July 30, 2012 8:59:35 PM UTC-4, sunsun wrote: > > thank you! actually I found another nice program the > ProteinDigestionSimulator, > http://omics.pnl.gov/software/ProteinDigestionSimulator.php. Both should > work! > sunsun > > On Mon, Jul 30, 2012 at 10:46 PM, Amit Yadav > >> Hi >> You can try digestdb.exe (comes with TPP) >> Regards, >> >> *Amit Kumar Yadav * >> Senior Research Fellow (SRF-CSIR) >> IGIB, New Delhi (India) >> >> *MassWiz Web server* <http://masswiz.igib.res.in> >> * <http://masswiz.igib.res.in>**MassWiz sourceforge >> project*<https://sourceforge.net/projects/masswiz> >> * >> <https://sourceforge.net/projects/masswiz>**MassWiki*<https://sourceforge.net/apps/mediawiki/masswiz/index.php?title=MassWiki> >> >> >> >> On Mon, Jul 30, 2012 at 7:41 PM, zeyu sun >> >>> Hi, >>> I'm wondering if any one here know how to predict all tryptic peptides >>> from the whole E.coli proteome. There are tools like PeptideCutter for >>> proteolytic prediction, but it can only cut one protein at each time. Any >>> tools around that can take the whole FASTA database and output a list of >>> tryptic peptides along with their masses? >>> thank you very much! >>> >>> sunsun >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To post to this group, send email to [email protected]. >>> To unsubscribe from this group, send email to >>> [email protected]. >>> For more options, visit this group at >>> http://groups.google.com/group/spctools-discuss?hl=en. >>> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To post to this group, send email to [email protected]. >> To unsubscribe from this group, send email to >> [email protected]. >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To view this discussion on the web visit https://groups.google.com/d/msg/spctools-discuss/-/UaS8FwRPsqIJ. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
