Is it getting stuck at "PepXMLViewer.cgi"... I am not sure if it will help... do you have "tmp" folder under "C:" drive ?
On Mon, Jul 30, 2012 at 7:33 PM, zeyu sun <[email protected]> wrote: > > Dear TPP team: > I came across a error message that I really cannot explain why. Hopefully > some of experts here can help me to decode the message. Really appreciated! > The data was collected from a LTQ-Orbitrap, the search was done by X!tandem > within the TPP environment using the default setting > "isb_default_input_kscore setting". > > The search result was automatically converted to pep.xml and when I try to > filter the results with peptideprophet I got error message like this: > _____________________________________________________________________________________________________________________________ > > run_in c:/Inetpub/wwwroot/ISB/data/data/AIF/20120728/processed; > c:\Inetpub\tpp-bin\xinteract -Nbsa1_3con_filtered.pep.xml -p0.95 -l7 -O > bsa1_3con.tandem.pep.xml > > ------------------------------ > > c:\Inetpub\tpp-bin\xinteract (TPP v4.5 RAPTURE rev 2, Build 201202031108 > (MinGW)) > > running: "C:/Inetpub/tpp-bin/InteractParser "bsa1_3con_filtered.pep.xml" > "bsa1_3con.tandem.pep.xml" -L"7"" > file 1: bsa1_3con.tandem.pep.xml > processed altogether 4615 results > > > results written to file > c:/Inetpub/wwwroot/ISB/data/data/AIF/20120728/processed/bsa1_3con_filtered.pep.xml > > direct your browser to > http://localhost/ISB/data/data/AIF/20120728/processed/bsa1_3con_filtered.pep.shtml > > > > command completed in 1 sec > > running: "C:/Inetpub/tpp-bin/DatabaseParser "bsa1_3con_filtered.pep.xml"" > command completed in 1 sec > > running: "C:/Inetpub/tpp-bin/RefreshParser "bsa1_3con_filtered.pep.xml" > "c:/Inetpub/wwwroot/ISB/data/dbase/BOVIN_DECOY.fasta"" > > > ------------------------------ > * ...skipping 23 lines of output... * > ------------------------------ > > WARNING: Mixture model quality test failed for charge (3+). > model complete after 25 iterations > command completed in 1 sec > > running: "C:/Inetpub/tpp-bin/ProphetModels.pl -i bsa1_3con_filtered.pep.xml" > Analyzing bsa1_3con_filtered.pep.xml ... > Parsing search results > "c:/Inetpub/wwwroot/ISB/data/data/AIF/20120728/processed/bsa1_3con (X! Tandem > (k-score))"... > => Total of 0 hits. > => Total of 0 decoy hits. > => Total of 0 excluded hits. > command completed in 0 sec > > running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I > c:/Inetpub/wwwroot/ISB/data/data/AIF/20120728/processed/bsa1_3con_filtered.pep.xml" > > command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I > c:/Inetpub/wwwroot/ISB/data/data/AIF/20120728/processed/bsa1_3con_filtered.pep.xml" > failed: Unknown error > > command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I > c:/Inetpub/wwwroot/ISB/data/data/AIF/20120728/processed/bsa1_3con_filtered.pep.xml" > exited with non-zero exit code: 255 > QUIT - the job is incomplete > > command "c:\Inetpub\tpp-bin\xinteract -Nbsa1_3con_filtered.pep.xml -p0.95 -l7 > -O bsa1_3con.tandem.pep.xml" failed: Unknown error > > *Command FAILED > __________________________________________________________ > > thank you so much in advance! > > sunsun > * > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
