Thanks for the reply Vishal, Yes, I do have tmp folder under the C drive. SunSun
On Tue, Jul 31, 2012 at 12:13 PM, Vishal Swaroop <[email protected]>wrote: > Is it getting stuck at "PepXMLViewer.cgi"... > > I am not sure if it will help... do you have "tmp" folder under "C:" drive > ? > > On Mon, Jul 30, 2012 at 7:33 PM, zeyu sun <[email protected]> wrote: > >> >> Dear TPP team: >> I came across a error message that I really cannot explain why. Hopefully >> some of experts here can help me to decode the message. Really appreciated! >> The data was collected from a LTQ-Orbitrap, the search was done by X!tandem >> within the TPP environment using the default setting >> "isb_default_input_kscore setting". >> >> >> The search result was automatically converted to pep.xml and when I try to >> filter the results with peptideprophet I got error message like this: >> _____________________________________________________________________________________________________________________________ >> >> >> run_in c:/Inetpub/wwwroot/ISB/data/data/AIF/20120728/processed; >> c:\Inetpub\tpp-bin\xinteract -Nbsa1_3con_filtered.pep.xml -p0.95 -l7 -O >> bsa1_3con.tandem.pep.xml >> >> ------------------------------ >> >> c:\Inetpub\tpp-bin\xinteract (TPP v4.5 RAPTURE rev 2, Build 201202031108 >> (MinGW)) >> >> running: "C:/Inetpub/tpp-bin/InteractParser "bsa1_3con_filtered.pep.xml" >> "bsa1_3con.tandem.pep.xml" -L"7"" >> file 1: bsa1_3con.tandem.pep.xml >> processed altogether 4615 results >> >> >> results written to file >> c:/Inetpub/wwwroot/ISB/data/data/AIF/20120728/processed/bsa1_3con_filtered.pep.xml >> >> direct your browser to >> http://localhost/ISB/data/data/AIF/20120728/processed/bsa1_3con_filtered.pep.shtml >> >> >> >> command completed in 1 sec >> >> running: "C:/Inetpub/tpp-bin/DatabaseParser "bsa1_3con_filtered.pep.xml"" >> command completed in 1 sec >> >> running: "C:/Inetpub/tpp-bin/RefreshParser "bsa1_3con_filtered.pep.xml" >> "c:/Inetpub/wwwroot/ISB/data/dbase/BOVIN_DECOY.fasta"" >> >> >> ------------------------------ >> * ...skipping 23 lines of output... * >> ------------------------------ >> >> WARNING: Mixture model quality test failed for charge (3+). >> model complete after 25 iterations >> command completed in 1 sec >> >> running: "C:/Inetpub/tpp-bin/ProphetModels.pl -i bsa1_3con_filtered.pep.xml" >> Analyzing bsa1_3con_filtered.pep.xml ... >> Parsing search results >> "c:/Inetpub/wwwroot/ISB/data/data/AIF/20120728/processed/bsa1_3con (X! >> Tandem (k-score))"... >> => Total of 0 hits. >> => Total of 0 decoy hits. >> => Total of 0 excluded hits. >> command completed in 0 sec >> >> running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I >> c:/Inetpub/wwwroot/ISB/data/data/AIF/20120728/processed/bsa1_3con_filtered.pep.xml" >> >> command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I >> c:/Inetpub/wwwroot/ISB/data/data/AIF/20120728/processed/bsa1_3con_filtered.pep.xml" >> failed: Unknown error >> >> command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I >> c:/Inetpub/wwwroot/ISB/data/data/AIF/20120728/processed/bsa1_3con_filtered.pep.xml" >> exited with non-zero exit code: 255 >> QUIT - the job is incomplete >> >> command "c:\Inetpub\tpp-bin\xinteract -Nbsa1_3con_filtered.pep.xml -p0.95 >> -l7 -O bsa1_3con.tandem.pep.xml" failed: Unknown error >> >> *Command FAILED >> __________________________________________________________ >> >> thank you so much in advance! >> >> sunsun >> * >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To post to this group, send email to [email protected]. >> To unsubscribe from this group, send email to >> [email protected]. >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
