Fabulous Eric, that's exactly what I was looking for! It was generalized beyond the terms I was searching, that must be why I missed it!
Cheers Leonard On Monday, September 3, 2012 7:57:35 AM UTC-7, Eric Deutsch wrote: > > Hi Leonard, I think this is what you're looking for: > > http://tools.proteomecenter.org/wiki/index.php?title=Software:SpectraST#Se > mi-empirical_Spectrum_Generation<http://tools.proteomecenter.org/wiki/index.php?title=Software:SpectraST#Semi-empirical_Spectrum_Generation> > > > Regards, > Eric > > > > -----Original Message----- > > From: [email protected] <javascript:> > > [mailto:spctools-<javascript:> > > [email protected] <javascript:>] On Behalf Of Leonard Foster > > Sent: Sunday, September 02, 2012 10:21 PM > > To: spctools-discuss > > Subject: [spctools-discuss] SpectraST and stable isotope labels > > > > Hi all > > > > I haven't found an answer to my question on this Group or the > > SpectraST wiki. Thus, I suspect the answer is 'no' but if not, I'm > > hoping someone here can tell me. > > > > The question is, if the spectra for a particular isotopically labelled > > form of a peptide does not exist in the spectral library but a > > differently labelled form does, can/does SpectraST adapt the spectra > > to what would be expected? For example, if LLAGTK (no label) exists in > > the spectral library but you have a SILAC-labelled sample (with normal > > Lys and D4-Lys) containing LLAGTK, can the algorithm do two searches, > > one a direct comparison and the second where all Y-ions are shifted by > > 4 Da? > > > > Thanks > > > > -- > > You received this message because you are subscribed to the Google > > Groups "spctools-discuss" group. > > To post to this group, send email to > > [email protected]<javascript:>. > > > To unsubscribe from this group, send email to spctools- > > [email protected] <javascript:>. > > For more options, visit this group at > > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To view this discussion on the web visit https://groups.google.com/d/msg/spctools-discuss/-/Jt-3v2h3nhsJ. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
