Hi there I have a problem when running spectrast on a pepxml file
spectrast -cP0.8 interact.pep.xml [...] PEPXML IMPORT: Cannot find MS2+ scan #9972 in file "/cluster/home/biol/loblum/test.mzXML". Scan not imported. PEPXML IMPORT: Cannot find MS2+ scan #9993 in file "/cluster/home/biol/loblum/test.mzXML". Scan not imported. However, If I go into the source file and add padding zeroes (for example <spectrum_query spectrum="testfile.9993.9993.2" start_scan="9993" end_scan="9993" precursor_neutral_mass="903.465026855469" assumed_charge="2" index="3513"> to <spectrum_query spectrum="testfile.09993.09993.2" start_scan="9993" end_scan="9993" precursor_neutral_mass="903.465026855469" assumed_charge="2" index="3513">) spectrast works fine. Can you confirm this? A bug? What happens if I have more than 99,999 scans?? Cheers, Lorenz -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To view this discussion on the web visit https://groups.google.com/d/msg/spctools-discuss/-/Hmtp7S7RTzoJ. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
