Software:

<software id="pwiz" version="3.0.3495">
<cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard" value=""/>

Instrument:

<cvParam cvRef="MS" accession="MS:1000556" name="LTQ Orbitrap XL" value=""/>

Filter line: "ITMS + c NSI d Full ms2 [email protected] [210.00-1615.00]"

Activation energy output:

<cvParam cvRef="MS" accession="MS:1000133" name="collision-induced
dissociation" value=""/>
<cvParam cvRef="MS" accession="MS:1000045" name="collision energy"
value="35.0" unitCvRef="UO" unitAccession="UO:0000266"
unitName="electronvolt"/>

* What is wrong: *

in case of ITMS, 35.0 is a so called "Normalized collision energy" (NCD);
it is measured in PERCENT (%), not eV.
Therefore, unitName="electronvolt" is wrong.


I am wondering if this bug is still in msconvert.

Thank you in advance.

Dmitrii

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