I use ASAPRatio and am trying to extract the number of unique peptides used for quantitation. I have to do this manually at the moment. That data is one of the requirements when publishing proteomics quantitation data. This value is different from the unique peptides reported in the interact.prot.shtml view, which I believe is the number of uniques assigned to that protein hit. However, when looking at the peptides actually used in the quantitation they are a subset of those assigned to the protein ID.
So is there a way to get at the number of unique peptides assigned to a protein that were also used in the quantitation? Thanks in advance, Brian -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
