This actually will not work, as by default the tpp_gui.pl script wont follow symlinks correctly. Ignore previous post.
On Monday, January 28, 2013 2:44:24 PM UTC-6, David wrote: > > One possible solution is to keep everything in the C: drive, and relocate > your data drive elsewhere using a hardlink or symlink. I have been using > this with some success in windows 7 and windows 8. I moved my data folder > to D:/TPP_MS_DATA/ and then I ran an elevated command prompt > (Administrator) and then ran the command: > > mklink /j C:/Inetpub/wwwroot/data/ to D:/TPP_MS_DATA/data > > Everything works as expected, all your data is stored somewhere else, and > you don't have to worry about pathing issues, as even the operating > system believes that the location of that directory is in > C:/Inetpub/wwwroot/data/ instead of somewhere else on another drive. > > Hope this helps! > > Cheers, > > David > > > On Friday, November 2, 2012 10:35:34 AM UTC-5, [email protected] wrote: >> >> Dear All, >> >> This is a "favorite" problem among TPP users, and we thought we had >> solved it once and for all. But with the new TPP version (4.6.0 and 4.6.1) >> there are issues with some of the tools when working with data on another >> drive (G: in our case). I have changed the WEBSERVER_ROOT environment >> variable, the tpp_gui.pl and of course the httpd.conf to point at G:, >> and keeping the C:\Inetpub\tpp-bin\ directory. X!Tandem works, but not >> PeptideProphet or the viewers. >> >> Below is our httpd.conf settings and the output from PeptideProphet. >> >> Changing everything back to C: makes everything work again, so the TPP >> installation itself is OK I think. >> >> Any ideas? >> >> >> Magnus >> >> >> httpd.conf: >> >> # >> # Begin settings for the Trans Proteomic Pipeline >> # >> >> # Add 24-hour timeout >> Timeout 86400 >> >> Alias /tpp-bin "G:/Inetpub/tpp-bin" >> <Directory "G:/Inetpub/tpp-bin"> >> Options Indexes MultiViews ExecCGI >> AllowOverride None >> Order allow,deny >> Allow from all >> >> AddHandler cgi-script .cgi .pl >> ScriptInterpreterSource Registry >> >> PassEnv WEBSERVER_ROOT >> PassEnv WEBSERVER_TMP >> </Directory> >> >> Alias /ISB "G:/Inetpub/wwwroot/ISB" >> >> Alias /schema "G:/Inetpub/wwwroot/schema" >> >> <Directory "G:/Inetpub/wwwroot"> >> Options Indexes MultiViews Includes >> AllowOverride None >> Order allow,deny >> Allow from all >> >> AddType text/html .shtml >> AddHandler server-parsed .shtml >> >> PassEnv WEBSERVER_ROOT >> PassEnv WEBSERVER_TMP >> </Directory> >> # >> # End settings for the Trans Proteomic Pipeline >> # >> >> >> output from PeptideProphet: >> >> g:\Inetpub\tpp-bin\xinteract (TPP v4.6 OCCUPY rev 1, Build 201209261035 >> (MinGW)) running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" >> "121009.LC1.IT1.EC.S0XXXX.Ecoli_1-B,1_01_3621.tandem.pep.xml" -L"7"" file >> 1: 121009.LC1.IT1.EC.S0XXXX.Ecoli_1-B,1_01_3621.tandem.pep.xml processed >> altogether 8922 results results written to file >> g:/Inetpub/wwwroot/ISB/data/interact.pep.xml direct your browser to >> http://localhost/ISB/data/interact.pep.shtml command completed in 2 sec >> running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml"" command >> completed in 0 sec running: "C:/Inetpub/tpp-bin/RefreshParser >> "interact.pep.xml" "g:/Inetpub/wwwroot/ISB/data/dbase/18.E_coli_K12.fasta"" >> - Searching the tree... - Linking duplicate entries... - Printing >> results... - Building Commentz-Walter keyword tree...command completed in 1 >> sec running: "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" >> MINPROB=0.05" (X! Tandem (k-score)) init with X! Tandem (k-score) trypsin >> MS Instrument info: Manufacturer: Bruker Daltonics, Model: esquire, >> Ionization: ESI, Analyzer: Quadrupole Ion Trap, Detector: MS:1000253 >> PeptideProphet (TPP v4.6 OCCUPY rev 1, Build 201209261035 (MinGW)) >> AKeller@ISB read in 31 1+, 4238 2+, 4472 3+, 0 4+, 0 5+, 0 6+, and 0 7+ >> spectra. Initialising statistical models ... negmean = -1.1254 negmean = >> -1.74678 negmean = -1.51536 negmean = -0.2 negmean = -0.2 negmean = -0.2 >> negmean = -0.2 Iterations: .........10.........20......... model complete >> after 30 iterations command completed in 1 sec running: >> "C:/Inetpub/tpp-bin/ProphetModels.pl -i interact.pep.xml" Analyzing >> interact.pep.xml ... Parsing search results >> "g:/Inetpub/wwwroot/ISB/data/121009.LC1.IT1.EC.S0XXXX.Ecoli_1-B,1_01_3621 >> (X! Tandem (k-score))"... => Total of 1623 hits. => Total of 0 decoy hits. >> => Total of 0 excluded hits. command completed in 1 sec running: >> "G:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I >> g:/Inetpub/wwwroot/ISB/data/interact.pep.xml" This application has >> requested the Runtime to terminate it in an unusual way. Please contact the >> application's support team for more information. command >> "G:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I >> g:/Inetpub/wwwroot/ISB/data/interact.pep.xml" failed: Unknown error command >> "G:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I >> g:/Inetpub/wwwroot/ISB/data/interact.pep.xml" exited with non-zero exit >> code: 255 QUIT - the job is incomplete command >> "g:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.05 -l7 -O >> 121009.LC1.IT1.EC.S0XXXX.Ecoli_1-B,1_01_3621.tandem.pep.xml" failed: >> Unknown error >> >> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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