Hi Bill, I have had great success using the ProteoWizard MS Convert tool. You will be able to convert your RAW files to either mzML or .mgf format with several options for centroiding, zlib compression, etc. Best to you,
James On Tue, Feb 12, 2013 at 4:37 PM, Vensel, William < [email protected]> wrote: > Hello, > > > > I am using the Petunia interface and trying to convert mzML files to mgf > files without success. I start with Thermo raw files that are in one case > 78,095 kb and generate a mzML file that is 100,674 kb. When I try to > generate a mgf file the file size is indicated as 1 kb. The only > information written to the file is: COM=Conversion of BSA_CID01.mzML to > mascot generic > > CHARGE=2+ and 3+ > > Please let me know what I have done wrong during this conversion process. > > > > Thanks, > > > > Bill > > > > > > > This electronic message contains information generated by the USDA solely > for the intended recipients. Any unauthorized interception of this message > or the use or disclosure of the information it contains may violate the law > and subject the violator to civil or criminal penalties. If you believe you > have received this message in error, please notify the sender and delete > the email immediately. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
