After installing 4.6.2 on Ubuntu 12.04 things are now working very nicely
in ASAPRatio.  I can see all the peak quantitation data etc.  Yeah!

Thanks a bunch to everyone at ISB who made this release possible.

Brian

On Fri, Feb 15, 2013 at 2:34 PM, Joseph Slagel <
[email protected]> wrote:

> Announcing the general availability of Trans-Proteomic Pipeline (TPP)
> "Occupy" 4.6.2
>
> This is a maintenance update to the Trans-Proteomic Pipeline (TPP)
> software which addresses a number of issues identified with version 4.6.1.
> All TPP users are urged to upgrade their installations to the latest
> version.  More information about the Trans-Proteomic Pipeline is available
> at the TPP wiki site <http://tools.proteomecenter.org/wiki/index.php>.
>
> The software is available for Windows as well as Linux and (unofficially)
> through OSX source from all the usual locations (please see the section
> below, "Getting the software").  Most users are recommended to use the
> Windows installer, which installs and configures the TPP and other
> required software (such as a web server).  For advanced users who need to
> customize the TPP, or for those who run high-throughput experiments, you
> can download the source code.
>
> == Release Notes ==
>
> * Release notes for this version containing the most important new
> features, changes, and known issues are available at:
>
> http://tools.proteomecenter. <http://goog_458723944>
> org/wiki/index.php?title=TPP:4.6.2_Release_Notes<http://tools.proteomecenter.org/wiki/index.php?title=TPP:4.6.2_Release_Notes>
>
>
> == Getting the TPP Software ==
>
> * Download the TPP version 4.6.2 native windows installer
> (TPP_Setup_v4_6_2.exe) from the Sashimi SourceForge project file releasepage:
>
>   http://sourceforge.net/projects/sashimi/files/Trans-Proteomic Pipeline (
> TPP)
>
> * Everyone is encouraged to read and contribute to our wiki, at
>   http://tools.proteomecenter.org/wiki/
>
> * For guides to installing and using our software, please see our wiki:
>   http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP
>
> * For downloading the source code, please go to the following link:
>   http://sourceforge.net/projects/sashimi/files/ and find the 4.6.2source 
> code .tgz package;
>
> or, check out the code directly from svn:
>   svn co
> http://sashimi.svn.sourceforge.net/svnroot/sashimi/tags/release_4-6-2
>
>   For building from source, please refer to the readme file in TPP/src as
> well as the wiki.
>
>
> The TPP Team: Luis, David, Mike, Joe, and Brian, plus all other
> developers who contributed to this release from the ISB.  Thanks to
> developers and users from the TPP's user community who provided feedback
> and code contributions.
>
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