Dear all,
When I run qualscore.jar (version 1.0_2), the following error occurred, as
has been discussed in
https://groups.google.com/d/topic/spctools-discuss/nlYPIMrGHuI/discussion
but did not provide further solution to the problem.
processing 20060427_digest_IPG2_7.mzXML... 18500 19000 19500 20000
20500 21000 21500
Exception in thread "main" java.lang.OutOfMemoryError: Java heap space
at java.util.Arrays.copyOf(Unknown Source)
at java.util.Arrays.copyOf(Unknown Source)
at java.util.ArrayList.grow(Unknown Source)
at java.util.ArrayList.ensureCapacityInternal(Unknown Source)
at java.util.ArrayList.add(Unknown Source)
at
org.systemsbiology.qualscore.peakselectors.IsotopePeaks.transformScan
(IsotopePeaks.java:83)
at
org.systemsbiology.qualscore.features.MasterFeatureGenerator.calcFeaturesForSpectrum(MasterFeatureGenerator.java:122)
at
org.systemsbiology.qualscore.commandline.Main$1.processScan(Main.java:227)
at
org.systemsbiology.qualscore.SingleInteractXML.enumerateDtasFromMZXML
(SingleInteractXML.java:109)
at
org.systemsbiology.qualscore.SingleInteractXML.enumerateScans(SingleInteractXML.java:71)
at
org.systemsbiology.qualscore.commandline.Main.<init>(Main.java:197)
at
org.systemsbiology.qualscore.commandline.Main.main(Main.java:1041)
So, what can I? Or any suggestion to using qualscore to filter tandem mass
spectra.
Thanks.
Jorey
--
You received this message because you are subscribed to the Google Groups
"spctools-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To post to this group, send email to [email protected].
Visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
For more options, visit https://groups.google.com/groups/opt_out.
