Hi Edwin, Did you ever get an answer to this? We always install Labkey/CPAS first but would be nice to know the root cause. DD
On Thursday, September 25, 2008 10:18:15 PM UTC-4, Edwin Lowe wrote: > > I mentioned this on the list a while ago. I have a problem with running > CPAS 8.1 and the latest TPP on the same box. It gets most of the way > through the CPAS system search, but then chokes on the final steps. For > some reason it looks like CPAS is trying to call the TPP binaries as my > CPAS install is on my E drive, rather than C drive. > > > > Any thought show I could make my TPP install CPAS friendly? I tried > changing the order in the path, but that didn’t seem to work. Only > uninstalling the TPP fixed it. > > > > Here’s the CPAS log. > > > > 26 Sep 2008 10:14:51,218 INFO : running: "ProteinProphet "2002.pep.xml" > "2002.pep-prot.xml" XML NOPLOT" > > 26 Sep 2008 10:14:51,625 INFO : ProteinProphet (C++) by Insilicos LLC and > LabKey Software, after the original Perl by A. Keller (TPP v4.0 JETSTREAM rev > 2, Build 200807011544 (MinGW)) > > 26 Sep 2008 10:14:51,968 INFO : (xml input) (using degen pep info) > > 26 Sep 2008 10:14:51,968 INFO : . . . reading in > E:/Pipeline/Data/FoodSafety/Biancia/data_august/xtandem/XTandem_Lmono_Gen/2002.work/2002.pep.xml. > . . > > 26 Sep 2008 10:14:52,453 INFO : . . . read in 0 1+, 2141 2+, 2761 3+, 892 4+, > 0 5+ spectra with min prob 0.05 > > 26 Sep 2008 10:14:53,250 INFO : 'perl' is not recognized as an internal or > external command, > > 26 Sep 2008 10:14:53,250 INFO : operable program or batch file. > > 26 Sep 2008 10:14:53,265 INFO : > > 26 Sep 2008 10:14:53,265 INFO : command "perl > c:/Inetpub/wwwroot/../tpp-bin/protxml2html.pl -file > "E:/Pipeline/Data/FoodSafety/Biancia/data_august/xtandem/XTandem_Lmono_Gen/2002.work/2002.pep-prot.xml" > 328" failed: Operation not permitted > > 26 Sep 2008 10:14:53,265 INFO : perl > c:/Inetpub/wwwroot/../tpp-bin/protxml2html.pl -file > "E:/Pipeline/Data/FoodSafety/Biancia/data_august/xtandem/XTandem_Lmono_Gen/2002.work/2002.pep-prot.xml" > 328 failed with code 1 > > 26 Sep 2008 10:14:53,281 INFO : > > 26 Sep 2008 10:14:53,281 INFO : command "ProteinProphet "2002.pep.xml" > "2002.pep-prot.xml" XML NOPLOT" exited with non-zero exit code: 1 > > 26 Sep 2008 10:14:53,281 INFO : QUIT - the job is incomplete > > 26 Sep 2008 10:14:53,281 INFO : > > 26 Sep 2008 10:14:53,281 INFO : command > "C:\Inetpub\tpp-bin\ProteinProphet.exe "2002.pep.xml" "2002.pep-prot.xml" XML > NOPLOT" failed: Operation not permitted > > 26 Sep 2008 10:14:53,281 ERROR: Failed running xinteract, exit code 1 > > > > > > Edwin Lowe > > Officer in Charge - Proteomics Mass Spectrometry > > Central Science Laboratory > > University of Tasmania > > Private Bag 74 > > HOBART 7001 > > Email: [email protected] <javascript:> > > Blog: http://edwininhobart.blogspot.com/ > > Ph: +61 3 62261718 > > Fax: +61 3 62262494 > > Mob: +61 415 031172 > > <http://edwininhobart.blogspot.com/> > > > > > > > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
