Having the old files remain might not make a difference, but intuitively removing them might help. You're welcome, and good luck!
On Sunday, April 21, 2013 7:10:30 PM UTC+1, Liam Bell wrote: > > I didn't remove the old files...not my brightest moment. > > I will do that and then do a fresh clean install and make the mods you > have made and let you know, although I may only be able to email the > results tomorrow sometime. > > Thank you for all your help though it's helping me NOT beat my head > against a brick wall! > > > > On 21 April 2013 20:04, Ross <[email protected] <javascript:>> wrote: > >> That's a shame. Did you completely remove all the old TPP files in >> between installs? >> >> The only difference I can see between our installs at the moment, is that >> I removed the space in my variable assignment, between '=' and '/usr'... >> What I will do is list all the things I did that were worth writing down >> (i.e. differed from the install guide...), and hope it helps: >> >> Install pre-req that wasn't listed: >> *# apt-get install libgd2-xpm-dev* >> * >> * >> *After install, when configuring Apache* >> * >> >> # chown -R www-data:www-data /usr/local/tpp/ >> >> # chmod -R 711 /usr/local/tpp/ >> # chmod -R a+X /usr/local/tpp/** >> * >> >> Does this help at all? >> >> On Sunday, April 21, 2013 6:44:14 PM UTC+1, Liam Bell wrote: >> >>> Nope - no dice... >>> >>> Changed the PERL_LIB_CORE= /usr/lib/perl/15.4.2/CORE in the >>> makefile.conf.incl file before re-running the compiling/building. >>> >>> Ran through the rest fo the steps from http://tools.** >>> proteomecenter.org/wiki/index.**php?title=TPP_4.5.2:_** >>> Installing_on_Ubuntu_10.04.3<http://tools.proteomecenter.org/wiki/index.php?title=TPP_4.5.2:_Installing_on_Ubuntu_10.04.3> >>> **as I have done successfully before. >>> >>> The server is working still (localhost => It works!) but I can't load up >>> http://localhost/tpp/cgi-**bin/tpp_gui.pl<http://localhost/tpp/cgi-bin/tpp_gui.pl> >>> - >>> still getting "The requested URL /tpp/cgi-bin/tpp_gui.pl was not found >>> on this server." >>> >>> Any other ideas? >>> >>> >>> On 21 April 2013 19:10, Ross <[email protected]> wrote: >>> >>>> Hi Liam, >>>> I set mine to /usr/lib/perl/5.14/CORE, but using 5.14.2 shouldn't make >>>> a difference, since the 5.14 folder is a symlink to 5.14.2. >>>> >>>> Yes, I would do that. Let's hope this is the fix. >>>> >>>> On Sunday, April 21, 2013 6:02:16 PM UTC+1, Liam Bell wrote: >>>> >>>>> Hi Ross, >>>>> >>>>> Here you go: >>>>> PERL_LIB_CORE= /usr/lib/perl/5.10/CORE/ >>>>> >>>>> The CORE folder does exist at /usr/lib/perl/5.14.2/CORE. >>>>> >>>>> Should I recompile and change that variable before I do? >>>>> >>>>> >>>>> On 21 April 2013 18:05, Ross <[email protected]> wrote: >>>>> >>>>>> Hm. In your Makefile.config.incl, what is your PERL_LIB_CORE variable >>>>>> ? Does the version of Perl in that variable match the version installed >>>>>> on >>>>>> your computer? (command line: $ perl --version) >>>>>> >>>>>> To test if the variable is viable, I navigated down the path of the >>>>>> variable in the terminal to see if the CORE folder actually existed. If >>>>>> I >>>>>> remember correctly I had to change the variable. >>>>>> >>>>>> Let me know if that yields something, and I'll get on my TPP >>>>>> computer to find out what I did. >>>>>> >>>>>> On Sunday, April 21, 2013 4:56:08 PM UTC+1, Liam Bell wrote: >>>>>> >>>>>>> It was set to root but I changed it to your settings and restarted >>>>>>> apache but still not working... >>>>>>> >>>>>>> It's rather vexing! >>>>>>> >>>>>>> >>>>>>> On 21 April 2013 17:24, Ross <[email protected]> wrote: >>>>>>> >>>>>>>> Hi Liam, >>>>>>>> >>>>>>>> I'm sorry this hasn't helped. I've cross checked the TPP entries of >>>>>>>> our two httpd.conf files (the one you posted above) and they are >>>>>>>> identical. >>>>>>>> >>>>>>>> Alternatively it could be your permissions. For the entire >>>>>>>> /usr/local/tpp folder I have ownership set to apache (www-data) and >>>>>>>> permissions as drwxr-xr-x. >>>>>>>> >>>>>>>> Does this help? >>>>>>>> >>>>>>>> R >>>>>>>> >>>>>>>> On Sunday, April 21, 2013 3:55:55 PM UTC+1, Liam Bell wrote: >>>>>>>> >>>>>>>>> Hi Ross, >>>>>>>>> >>>>>>>>> Thanks for the tip but it hasn't helped, would you be able to post >>>>>>>>> the contents of your httpd.conf file for me so I can make sure it is >>>>>>>>> the >>>>>>>>> same as what I currently have? >>>>>>>>> >>>>>>>>> Thanks, >>>>>>>>> Liam >>>>>>>>> >>>>>>>>> >>>>>>>>> On 21 April 2013 10:43, Ross <[email protected]> wrote: >>>>>>>>> >>>>>>>>>> Bear in mind that in some httpd.conf files there is a dedicated >>>>>>>>>> section for this: ### Section 3: Virtual Hosts >>>>>>>>>> >>>>>>>>>> On Sunday, 21 April 2013 09:42:29 UTC+1, Ross wrote: >>>>>>>>>>> >>>>>>>>>>> Hi all, >>>>>>>>>>> >>>>>>>>>>> I encountered this issue myself on Ubuntu 12.04: I found that >>>>>>>>>>> making the tpp.4.6.2 file in /etc/apache2/sites-available didn't >>>>>>>>>>> work >>>>>>>>>>> either. >>>>>>>>>>> >>>>>>>>>>> Instead, I found the following solved the issue: >>>>>>>>>>> >>>>>>>>>>> - Paste the contents of the tpp-x.y.z file into >>>>>>>>>>> /etc/apache2/httpd.conf >>>>>>>>>>> >>>>>>>>>>> This definitely worked for me. I'm by no means an expert on >>>>>>>>>>> Apache, however. >>>>>>>>>>> >>>>>>>>>>> Hope this helps, >>>>>>>>>>> Ross >>>>>>>>>>> >>>>>>>>>>> On Thursday, 21 March 2013 13:19:31 UTC, raju wrote: >>>>>>>>>>>> >>>>>>>>>>>> Hi, >>>>>>>>>>>> I hope you can help. >>>>>>>>>>>> I've been trying to install TPP on a linux vm, specifically >>>>>>>>>>>> Ubuntu 12.04 LTS in virtual box. >>>>>>>>>>>> >>>>>>>>>>>> I've been following the TPP installation guide on http://tools. >>>>>>>>>>>> **proteomecenter********.org/wiki/index.**php?title=TPP_******* >>>>>>>>>>>> *4.5.2:_**Installing_on_Ubuntu_**10******.04.3<http://tools.proteomecenter.org/wiki/index.php?title=TPP_4.5.2:_Installing_on_Ubuntu_10.04.3> >>>>>>>>>>>> . >>>>>>>>>>>> >>>>>>>>>>>> I've been copying and pasting where possible and it looked like >>>>>>>>>>>> everything was working during the setup i.e. no error messages. >>>>>>>>>>>> >>>>>>>>>>>> However when i go to my web browser, google chrome, and go to >>>>>>>>>>>> http://localhost/tpp/cgi-**bi********n/tpp_gui.pl<http://localhost/tpp/cgi-bin/tpp_gui.pl> >>>>>>>>>>>> >>>>>>>>>>>> I get the following error: >>>>>>>>>>>> >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ---------------------------- >>>>>>>>>>>> Not Found >>>>>>>>>>>> >>>>>>>>>>>> The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on >>>>>>>>>>>> this server. >>>>>>>>>>>> >>>>>>>>>>>> Apache/2.2.22 (Ubuntu) Server at localhost Port 80 >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ---------------------------- >>>>>>>>>>>> >>>>>>>>>>>> Apache is working, as i can see the page. >>>>>>>>>>>> I've checked port 80 is free >>>>>>>>>>>> I've ensured the firewall has been disabled - just in case. >>>>>>>>>>>> >>>>>>>>>>>> When I look in to the apache error log: >>>>>>>>>>>> The following errors were recorded: >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ---------------------------- >>>>>>>>>>>> [Thu Mar 21 13:01:06 2013] [error] [client 127.0.0.1] File does >>>>>>>>>>>> not exist: /var/www/tpp >>>>>>>>>>>> [Thu Mar 21 13:01:06 2013] [error] [client 127.0.0.1] File does >>>>>>>>>>>> not exist: /var/www/favicon.ico >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ---------------------------- >>>>>>>>>>>> >>>>>>>>>>>> I've checked that the file >>>>>>>>>>>> /etc/apache2/sites-**availa********ble/tpp-x.y.z >>>>>>>>>>>> is as described in the installation guide >>>>>>>>>>>> >>>>>>>>>>>> The file exists in the path stated and I copied and pasted the >>>>>>>>>>>> text into the file to avoid typos. >>>>>>>>>>>> >>>>>>>>>>>> Any help would be greatly appreciated!!! >>>>>>>>>>>> >>>>>>>>>>>> Many thanks, >>>>>>>>>>>> Raj >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> -- >>>>>>>>>> You received this message because you are subscribed to a topic >>>>>>>>>> in the Google Groups "spctools-discuss" group. >>>>>>>>>> To unsubscribe from this topic, visit >>>>>>>>>> https://groups.google.com/d/**to******pic/spctools-discuss/** >>>>>>>>>> pzyzzSmoB******xY/unsubscribe?hl=en<https://groups.google.com/d/topic/spctools-discuss/pzyzzSmoBxY/unsubscribe?hl=en> >>>>>>>>>> . >>>>>>>>>> To unsubscribe from this group and all its topics, send an email >>>>>>>>>> to spctools-discu...@**googlegroups******.com. >>>>>>>>>> To post to this group, send email to spctools...@googlegroups.** >>>>>>>>>> com. >>>>>>>>>> >>>>>>>>>> Visit this group at http://groups.google.com/**group****** >>>>>>>>>> /spctools-discuss?hl=en<http://groups.google.com/group/spctools-discuss?hl=en> >>>>>>>>>> . >>>>>>>>>> For more options, visit https://groups.google.com/**grou****** >>>>>>>>>> ps/opt_out <https://groups.google.com/groups/opt_out>. >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>> On Sunday, April 21, 2013 3:55:55 PM UTC+1, Liam Bell wrote: >>>>>>>> >>>>>>>>> Hi Ross, >>>>>>>>> >>>>>>>>> Thanks for the tip but it hasn't helped, would you be able to post >>>>>>>>> the contents of your httpd.conf file for me so I can make sure it is >>>>>>>>> the >>>>>>>>> same as what I currently have? >>>>>>>>> >>>>>>>>> Thanks, >>>>>>>>> Liam >>>>>>>>> >>>>>>>>> >>>>>>>>> On 21 April 2013 10:43, Ross <[email protected]> wrote: >>>>>>>>> >>>>>>>>>> Bear in mind that in some httpd.conf files there is a dedicated >>>>>>>>>> section for this: ### Section 3: Virtual Hosts >>>>>>>>>> >>>>>>>>>> On Sunday, 21 April 2013 09:42:29 UTC+1, Ross wrote: >>>>>>>>>>> >>>>>>>>>>> Hi all, >>>>>>>>>>> >>>>>>>>>>> I encountered this issue myself on Ubuntu 12.04: I found that >>>>>>>>>>> making the tpp.4.6.2 file in /etc/apache2/sites-available didn't >>>>>>>>>>> work >>>>>>>>>>> either. >>>>>>>>>>> >>>>>>>>>>> Instead, I found the following solved the issue: >>>>>>>>>>> >>>>>>>>>>> - Paste the contents of the tpp-x.y.z file into >>>>>>>>>>> /etc/apache2/httpd.conf >>>>>>>>>>> >>>>>>>>>>> This definitely worked for me. I'm by no means an expert on >>>>>>>>>>> Apache, however. >>>>>>>>>>> >>>>>>>>>>> Hope this helps, >>>>>>>>>>> Ross >>>>>>>>>>> >>>>>>>>>>> On Thursday, 21 March 2013 13:19:31 UTC, raju wrote: >>>>>>>>>>>> >>>>>>>>>>>> Hi, >>>>>>>>>>>> I hope you can help. >>>>>>>>>>>> I've been trying to install TPP on a linux vm, specifically >>>>>>>>>>>> Ubuntu 12.04 LTS in virtual box. >>>>>>>>>>>> >>>>>>>>>>>> I've been following the TPP installation guide on http://tools. >>>>>>>>>>>> **proteomecenter********.org/wiki/index.**php?title=TPP_******* >>>>>>>>>>>> *4.5.2:_**Installing_on_Ubuntu_**10******.04.3<http://tools.proteomecenter.org/wiki/index.php?title=TPP_4.5.2:_Installing_on_Ubuntu_10.04.3> >>>>>>>>>>>> . >>>>>>>>>>>> >>>>>>>>>>>> I've been copying and pasting where possible and it looked like >>>>>>>>>>>> everything was working during the setup i.e. no error messages. >>>>>>>>>>>> >>>>>>>>>>>> However when i go to my web browser, google chrome, and go to >>>>>>>>>>>> http://localhost/tpp/cgi-**bi********n/tpp_gui.pl<http://localhost/tpp/cgi-bin/tpp_gui.pl> >>>>>>>>>>>> >>>>>>>>>>>> I get the following error: >>>>>>>>>>>> >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ---------------------------- >>>>>>>>>>>> Not Found >>>>>>>>>>>> >>>>>>>>>>>> The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on >>>>>>>>>>>> this server. >>>>>>>>>>>> >>>>>>>>>>>> Apache/2.2.22 (Ubuntu) Server at localhost Port 80 >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ---------------------------- >>>>>>>>>>>> >>>>>>>>>>>> Apache is working, as i can see the page. >>>>>>>>>>>> I've checked port 80 is free >>>>>>>>>>>> I've ensured the firewall has been disabled - just in case. >>>>>>>>>>>> >>>>>>>>>>>> When I look in to the apache error log: >>>>>>>>>>>> The following errors were recorded: >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ---------------------------- >>>>>>>>>>>> [Thu Mar 21 13:01:06 2013] [error] [client 127.0.0.1] File does >>>>>>>>>>>> not exist: /var/www/tpp >>>>>>>>>>>> [Thu Mar 21 13:01:06 2013] [error] [client 127.0.0.1] File does >>>>>>>>>>>> not exist: /var/www/favicon.ico >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ------------------------------********** >>>>>>>>>>>> ---------------------------- >>>>>>>>>>>> >>>>>>>>>>>> I've checked that the file >>>>>>>>>>>> /etc/apache2/sites-**availa********ble/tpp-x.y.z >>>>>>>>>>>> is as described in the installation guide >>>>>>>>>>>> >>>>>>>>>>>> The file exists in the path stated and I copied and pasted the >>>>>>>>>>>> text into the file to avoid typos. >>>>>>>>>>>> >>>>>>>>>>>> Any help would be greatly appreciated!!! >>>>>>>>>>>> >>>>>>>>>>>> Many thanks, >>>>>>>>>>>> Raj >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> -- >>>>>>>>>> You received this message because you are subscribed to a topic >>>>>>>>>> in the Google Groups "spctools-discuss" group. >>>>>>>>>> To unsubscribe from this topic, visit >>>>>>>>>> https://groups.google.com/d/**to******pic/spctools-discuss/** >>>>>>>>>> pzyzzSmoB******xY/unsubscribe?hl=en<https://groups.google.com/d/topic/spctools-discuss/pzyzzSmoBxY/unsubscribe?hl=en> >>>>>>>>>> . >>>>>>>>>> To unsubscribe from this group and all its topics, send an email >>>>>>>>>> to spctools-discu...@**googlegroups******.com. >>>>>>>>>> To post to this group, send email to spctools...@googlegroups.** >>>>>>>>>> com. >>>>>>>>>> >>>>>>>>>> Visit this group at http://groups.google.com/**group****** >>>>>>>>>> /spctools-discuss?hl=en<http://groups.google.com/group/spctools-discuss?hl=en> >>>>>>>>>> . >>>>>>>>>> For more options, visit https://groups.google.com/**grou****** >>>>>>>>>> ps/opt_out <https://groups.google.com/groups/opt_out>. >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>> >>>>>>>>> -- >>>>>>>> You received this message because you are subscribed to a topic in >>>>>>>> the Google Groups "spctools-discuss" group. >>>>>>>> To unsubscribe from this topic, visit https://groups.google.com/d/* >>>>>>>> *to****pic/spctools-discuss/**pzyzzSmoB****xY/unsubscribe?hl=en<https://groups.google.com/d/topic/spctools-discuss/pzyzzSmoBxY/unsubscribe?hl=en> >>>>>>>> . >>>>>>>> To unsubscribe from this group and all its topics, send an email to >>>>>>>> spctools-discu...@**googlegroups****.com. >>>>>>>> To post to this group, send email to spctools...@googlegroups.**com >>>>>>>> . >>>>>>>> Visit this group at http://groups.google.com/**group**** >>>>>>>> /spctools-discuss?hl=en<http://groups.google.com/group/spctools-discuss?hl=en> >>>>>>>> . >>>>>>>> For more options, visit https://groups.google.com/**grou**** >>>>>>>> ps/opt_out <https://groups.google.com/groups/opt_out>. >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>> >>>>>>> -- >>>>>> You received this message because you are subscribed to a topic in >>>>>> the Google Groups "spctools-discuss" group. >>>>>> To unsubscribe from this topic, visit https://groups.google.com/d/** >>>>>> to**pic/spctools-discuss/**pzyzzSmoB**xY/unsubscribe?hl=en<https://groups.google.com/d/topic/spctools-discuss/pzyzzSmoBxY/unsubscribe?hl=en> >>>>>> . >>>>>> To unsubscribe from this group and all its topics, send an email to >>>>>> spctools-discu...@**googlegroups**.com. >>>>>> To post to this group, send email to spctools...@googlegroups.**com. >>>>>> Visit this group at http://groups.google.com/**group** >>>>>> /spctools-discuss?hl=en<http://groups.google.com/group/spctools-discuss?hl=en> >>>>>> . >>>>>> For more options, visit >>>>>> https://groups.google.com/**grou**ps/opt_out<https://groups.google.com/groups/opt_out> >>>>>> . >>>>>> >>>>>> >>>>>> >>>>> >>>>> -- >>>> You received this message because you are subscribed to a topic in the >>>> Google Groups "spctools-discuss" group. >>>> To unsubscribe from this topic, visit https://groups.google.com/d/** >>>> topic/spctools-discuss/**pzyzzSmoBxY/unsubscribe?hl=en<https://groups.google.com/d/topic/spctools-discuss/pzyzzSmoBxY/unsubscribe?hl=en> >>>> . >>>> To unsubscribe from this group and all its topics, send an email to >>>> spctools-discu...@**googlegroups.com. >>>> To post to this group, send email to spctools...@googlegroups.**com. >>>> Visit this group at http://groups.google.com/** >>>> group/spctools-discuss?hl=en<http://groups.google.com/group/spctools-discuss?hl=en> >>>> . >>>> For more options, visit >>>> https://groups.google.com/**groups/opt_out<https://groups.google.com/groups/opt_out> >>>> . >>>> >>>> >>>> >>> >>> -- >> You received this message because you are subscribed to a topic in the >> Google Groups "spctools-discuss" group. >> To unsubscribe from this topic, visit >> https://groups.google.com/d/topic/spctools-discuss/pzyzzSmoBxY/unsubscribe?hl=en >> . >> To unsubscribe from this group and all its topics, send an email to >> [email protected] <javascript:>. >> To post to this group, send email to >> [email protected]<javascript:> >> . >> Visit this group at http://groups.google.com/group/spctools-discuss?hl=en >> . >> For more options, visit https://groups.google.com/groups/opt_out. >> >> >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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