Armin, You should be able to do this irrespective of any tool. What specifically is the problem you are facing?
Regards, *Amit Kumar Yadav * Senior Research Fellow (SRF-CSIR) IGIB, New Delhi (India) *MassWiz Web server* <http://masswiz.igib.res.in> * <http://masswiz.igib.res.in>**MassWiz sourceforge project*<https://sourceforge.net/projects/masswiz> * <https://sourceforge.net/projects/masswiz>**MassWiki*<https://sourceforge.net/apps/mediawiki/masswiz/index.php?title=MassWiki> On Fri, Apr 19, 2013 at 1:54 PM, Armin <[email protected]> wrote: > Hi all > > I have a non-quantitative LC-MS/MS data set that comes from a > co-inoculation fermentation experiment with two yeast species. I would like > to identify what proteins are present in this sample, realising that there > will be proteins present from both yeast. > > Is there any reason why I can't simply merge the proteome fastas into one > fasta, create a decoy database, and then run it through the TPP? > > Thank you in advance > > Armin Geiger > Msc Student > University of Stellenbosch, South Africa > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
