PTMProphet takes an pepXML file as input.  It can either write the output
back to the same file or create a new file containing the results.

-David


On Tue, Jun 18, 2013 at 1:24 AM, 钟传奇 <[email protected]> wrote:

> Hi, everyone,
> I want to use ptmprophet to analyze the phosphorylation sites
> localization, but I do not know what type of file should be imported into
> PTMprophet. I have converted mascot dat files to pepXML, and analyzed
> pepXML using interact and iprophet.
>
> Thanks a lot.
>
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