David, thanks for your quick reply.
在 2013-6-19 下午3:48,"David Shteynberg" <[email protected]
>写道:

> PTMProphet takes an pepXML file as input.  It can either write the output
> back to the same file or create a new file containing the results.
>
> -David
>
>
> On Tue, Jun 18, 2013 at 1:24 AM, 钟传奇 <[email protected]> wrote:
>
>> Hi, everyone,
>> I want to use ptmprophet to analyze the phosphorylation sites
>> localization, but I do not know what type of file should be imported into
>> PTMprophet. I have converted mascot dat files to pepXML, and analyzed
>> pepXML using interact and iprophet.
>>
>> Thanks a lot.
>>
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