msconvert (ProteoWizard 3.0.4743 32bit) should be able to do this, however, I have difficulty in using it to convert wiff files into mzXML. Every time, msconvert only generates a small mzXML (only 2kb) file which seems not contain any data (contents of a typical generated mzXML file are listed below). So I have to use mzWiff for this purpose. Could some one please share a newer mzWiff.exe with me or show me how to use msconvert correctly? I have installed skyline on my computer for msconvert. My OS is win7 64bit. Thanks.
<?xml version="1.0" encoding="ISO-8859-1"?> <mzXML xmlns="http://sashimi.sourceforge.net/schema_revision/mzXML_3.2"; xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/mzXML_3.2 http://sashimi.sourceforge.net/schema_revision/mzXML_3.2/mzXML_idx_3.2.xsd";> <msRun scanCount="0" startTime="" endTime=""> <parentFile fileName="file://./Sample.wiff" fileType="RAWData" fileSha1="94a9c450ff213f4791de09da3ef867b9036e3b11"/> <msInstrument msInstrumentID="1"> <msManufacturer category="msManufacturer" value="instrument model"/> <msModel category="msModel" value="Applied Biosystems instrument model"/> <software type="acquisition" name="Analyst" version="unknown"/> </msInstrument> <dataProcessing> <software type="conversion" name="ProteoWizard" version="3.0.4743"/> <processingOperation name="Conversion to mzML"/> </dataProcessing> </msRun> <sha1>ca60d7b35b33f31d4b0e2ca93192a3fdfad9aa0d</sha1> </mzXML> On Thursday, July 25, 2013 9:45:36 PM UTC-4, [email protected] wrote: > > Could some one please share it with me ([email protected]) if he/she has > it? According the below link, such version was written on 2010, but I > cannot find a copy of it online. Many thanks. > > Best, > Kang > > > https://skyline.gs.washington.edu/labkey/announcements/home/support/thread.view?entityId=4ab351b9-8be0-102e-a614-e08d31b97d89&_docid=thread%3A4ab351b9-8be0-102e-a614-e08d31b97d89 > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
