I would suggest that you follow-up with a post at the Skyline site requesting the mzWiff binary. Similarly, consider posting to the ProteoWizard support forum about your problems using msconvert on your wiff file; the developers there are pretty responsive to fixing any problems that people have with msconvert. Good luck.
On Fri, Jul 26, 2013 at 6:45 AM, <[email protected]> wrote: > msconvert (ProteoWizard 3.0.4743 32bit) should be able to do this, > however, I have difficulty in using it to convert wiff files into mzXML. > Every time, msconvert only generates a small mzXML (only 2kb) file which > seems not contain any data (contents of a typical generated mzXML file are > listed below). So I have to use mzWiff for this purpose. Could some one > please share a newer mzWiff.exe with me or show me how to use msconvert > correctly? I have installed skyline on my computer for msconvert. My OS is > win7 64bit. Thanks. > > > <?xml version="1.0" encoding="ISO-8859-1"?> > <mzXML xmlns="http://sashimi.sourceforge.net/schema_revision/mzXML_3.2"; > xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; > xsi:schemaLocation=" > http://sashimi.sourceforge.net/schema_revision/mzXML_3.2 > http://sashimi.sourceforge.net/schema_revision/mzXML_3.2/mzXML_idx_3.2.xsd > "> > <msRun scanCount="0" startTime="" endTime=""> > <parentFile fileName="file://./Sample.wiff" > fileType="RAWData" > fileSha1="94a9c450ff213f4791de09da3ef867b9036e3b11"/> > <msInstrument msInstrumentID="1"> > <msManufacturer category="msManufacturer" value="instrument model"/> > <msModel category="msModel" value="Applied Biosystems instrument > model"/> > <software type="acquisition" name="Analyst" version="unknown"/> > </msInstrument> > <dataProcessing> > <software type="conversion" name="ProteoWizard" version="3.0.4743"/> > <processingOperation name="Conversion to mzML"/> > </dataProcessing> > </msRun> > <sha1>ca60d7b35b33f31d4b0e2ca93192a3fdfad9aa0d</sha1> > </mzXML> > > > On Thursday, July 25, 2013 9:45:36 PM UTC-4, [email protected] wrote: >> >> Could some one please share it with me ([email protected]) if he/she has >> it? According the below link, such version was written on 2010, but I >> cannot find a copy of it online. Many thanks. >> >> Best, >> Kang >> >> https://skyline.gs.washington.**edu/labkey/announcements/home/** >> support/thread.view?entityId=**4ab351b9-8be0-102e-a614-** >> e08d31b97d89&_docid=thread%**3A4ab351b9-8be0-102e-a614-**e08d31b97d89<https://skyline.gs.washington.edu/labkey/announcements/home/support/thread.view?entityId=4ab351b9-8be0-102e-a614-e08d31b97d89&_docid=thread%3A4ab351b9-8be0-102e-a614-e08d31b97d89> >> >> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
