Ok I found the problem. It was because I was specifying the option -MONO in the xinteract command...which it seems is depreciated. If I remove this, everything works fine.
Thanks! Chris On Monday, August 5, 2013 5:19:51 PM UTC+2, Jimmy Eng wrote: > > If you have spaces in your directory path or file name i.e. "PTMProphetParser > NO ", get rid of those and try again? > > > On Mon, Aug 5, 2013 at 6:49 AM, chr12is <[email protected] > <javascript:>>wrote: > >> Hi all, >> >> I am having an error when using xinteract. I am running the newest >> version of the TPP (4.6.3) on a CentOS cluster. Here is the error: >> >> running: "/software/src/TPP/bin/PTMProphetParser NO >> /output/testoutput.ipro.pep.xml /output/testoutput.ptm.ipro.pep.xml" >> INFO: Writing file /testoutput.ptm.ipro.pep.xml ... >> terminate called after throwing an instance of >> 'boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<std::ios_base::failure> >> >> >' >> what(): failed opening file: No such file or directory >> >> command "/software/src/TPP/bin/PTMProphetParser NO >> /output/testoutput.ipro.pep.xml /output/testoutput.ptm.ipro.pep.xml" exited >> with non-zero exit code: 6 >> QUIT - the job is incomplete >> >> I see no way to disable PTM Prophet, so I cannot get around it. If I run >> the same xinteract command in TPP 4.6.2 on the same machine, it runs fine. >> I can see that it is looking for that file, but I do not understand why. I >> haven't told it to do anything with PTM prophet. >> >> Thanks, >> Chris >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to >> [email protected]<javascript:> >> . >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/groups/opt_out. >> >> >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
