On Friday, March 8, 2013 10:33:43 AM UTC+1, Francesco Mancuso wrote:
>
>  Dear list,
> I have a "problem" showing MSMS spectra with Lorikeet. 
> I am using the 4.6.1 version of TPP in a linux web server.
>
> In the PepXML page the links of IONS2 make use of the plot-msms-js.cgi 
> script and point to a folder in which in theory there are all the dta and 
> out files. 
> Using Mascot2XML tool you can convert the .dat Mascot file into PepXML and 
> generate or not (according to -notgz option) a tgz file that contains the 
> info for Lorikeet. For what I saw I cannot find an automatic way to 
> uncompress the tgz file into the folder pointed by Lorikeet. Is this 
> normal? 
> To see the spectra I have always to manually uncompress the tgz files?
>
> Many thanks for the help,
> Francesco
>
> PS I have already modified the http.conf file with the ISB alias.
>
> -- 
>
> *Francesco Mattia Mancuso* 
> Bioinformatician 
>
> - Proteomics Core Facility 
>
> CRG-Centre for Genomic Regulation 
> C/ Dr. Aiguader, 88 (Edif. PRBB) 
> 08003 Barcelona, Spain 
>
> Mail: [email protected] <javascript:> 
> Phone: +34 933160869 
>  

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