Hello All, I got the answer for .pep.xml conversion it was being answered previously, there is an option -op which writes output in .pep.xml in OMSSA link " https://groups.google.com/forum/#!topic/spctools-discuss/RHJwyTBiNIQ"; .
regards, puneet On Sat, Sep 28, 2013 at 3:29 PM, punit kadimi <[email protected]> wrote: > Hello All, > > I am trying to convert omssa XML file to .pep.xml format using > omssa2pepXML.exe and getting some error, > unable to figure out what is the problem, also i tried to convert the ASN > Binary and ASN Text file obtained from OMSSA on same > dataset by using flags [-asn] [-asntext] and again got the similar error > message. > > > Currently using omssa-2.1.9.win32. > > I am pasting below 1 of the error message i got while converting omssa xml > to pep.xml. > > Reading 54ProtMix_S1R1_target.omx as XML > Error: (106.16) Application's execution failed > NCBI C++ Exception: > Error: (CSerialException::eFormatError) line 3: incompatible type > MSResponse<>MSSearch ( at MSSearch) > > > I will be really thankful if any one can suggest me whats going wrong here. > > thanks in advance, > > Puneet > > > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
