Hi Josh,
Sure thing, why don't you go ahead and add something like a NOMODELS (or
whatever you want to call it) option to ProteinProphet usage?  We'll be
happy to incorporate it into the code.
Cheers,
--Luis



On Mon, Oct 14, 2013 at 10:53 AM, Josh Eckels <[email protected]> wrote:

> Hello,
>
> I'm working to adopt a new build of the TPP for LabKey Server. It looks
> like that TPP 4.6.2 added tpp_models.pl to the xinteract workflow. It
> appears to be conditionally executed as part of PeptideProphet execution
> (it's wrapped in a check for getIsInteractiveMode()), but always invoked
> for ProteinProphet. For our usage, it would be great to have both usages
> conditionalized, so that we don't introduce a dependency on Perl.
>
> Is this something that might be considered? I'd be happy to submit a patch.
>
> Thanks,
> Josh
>
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